mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 32,322 | G→A | 3.8% | L502L (TTG→TTA) | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | 152,527 | T→A | 7.4% | T96S (ACT→TCT) | yadM ← | putative fimbrial‑like adhesin protein |
| RA | 201,780 | Δ1 bp | 4.1% | coding (810/1026 nt) | lpxD → | UDP‑3‑O‑(3‑hydroxymyristoyl)‑glucosamine N‑acyltransferase |
| RA | 202,876 | Δ1 bp | 4.1% | coding (317/789 nt) | lpxA → | UDP‑N‑acetylglucosamine acetyltransferase |
| RA | 218,290 | A→T | 4.6% | S162S (TCT→TCA) | proS ← | prolyl‑tRNA synthetase |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 285,846 | Δ1 bp | 4.6% | coding (452/1383 nt) | yagG → | CP4‑6 prophage, putative sugar transporter |
| RA | 292,362:1 | +C | 6.3% | coding (587/627 nt) | yagK ← | CP4‑6 prophage, conserved protein |
| RA | 292,362:2 | +A | 6.3% | coding (587/627 nt) | yagK ← | CP4‑6 prophage, conserved protein |
| RA | 349,615 | T→C | 6.6% | intergenic (+43/‑397) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 349,624 | C→T | 5.3% | intergenic (+52/‑388) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 349,642 | A→G | 10.9% | intergenic (+70/‑370) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 349,673 | G→C | 10.2% | intergenic (+101/‑339) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 349,676 | G→A | 10.1% | intergenic (+104/‑336) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 349,717 | T→C | 8.7% | intergenic (+145/‑295) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 374,972 | T→C | 8.8% | intergenic (+91/‑487) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 374,986 | T→C | 10.9% | intergenic (+105/‑473) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 374,999:1 | +C | 6.9% | intergenic (+118/‑460) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 375,000 | T→A | 6.5% | intergenic (+119/‑459) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 375,001 | T→A | 6.7% | intergenic (+120/‑458) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 375,019 | Δ1 bp | 5.8% | intergenic (+138/‑440) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 375,020 | T→G | 6.1% | intergenic (+139/‑439) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 413,418 | A→T | 4.2% | L779Q (CTA→CAA) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
| RA | 700,948 | A→C | 100% | I216S (ATT→AGT) | nagC ← | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor |
| RA | 809,470 | Δ1 bp | 4.1% | coding (127/1041 nt) | bioB → | biotin synthase |
| RA | 985,712 | C→T | 6.2% | intergenic (‑3/+182) | aspC ← / ← ompF | aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia,b,F) |
| RA | 1,269,766 | C→T | 5.9% | A15A (GCG→GCA) | ldrB ← | toxic polypeptide, small |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,571,975:1 | +G | 7.1% | coding (71/1401 nt) | gadB ← | glutamate decarboxylase B, PLP‑dependent |
| RA | 1,617,465 | A→G | 6.5% | T146T (ACA→ACG) | ydeA → | arabinose efflux transporter, arabinose‑inducible |
| RA | 1,708,814 | A→G | 11.4% | A632A (GCA→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component, putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,762,280 | T→A | 5.7% | E78V (GAA→GTA) | sufC ← | SufBCD Fe‑S cluster assembly scaffold protein, ATP‑binding protein |
| RA | 1,787,828 | G→A | 8.7% | A128A (GCG→GCA) | ppsR → | PEP synthase kinase and PEP synthase pyrophosphorylase |
| RA | 1,833,727 | G→A | 4.4% | L109L (CTG→CTA) | ydjX → | TVP38/TMEM64 family inner membrane protein |
| RA | 1,880,008 | G→A | 5.6% | intergenic (‑60/+113) | yeaR ← / ← leuE | DUF1971 family protein, nitrate‑inducible/leucine efflux protein |
| RA | 1,933,865 | A→T | 5.3% | V247D (GTT→GAT) | edd ← | 6‑phosphogluconate dehydratase |
| RA | 1,952,107 | T→C | 5.7% | I238T (ATT→ACT) | yecE → | UPF0759 family protein |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 2,062,486 | C→T | 5.0% | G280R (GGG→AGG) | ldtA ← | L,D‑transpeptidase linking Lpp to murein |
| RA | 2,131,940 | T→C | 5.8% | K44R (AAA→AGA) | wcaC ← | putative glycosyl transferase |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,304,796 | T→C | 15.1% | intergenic (+405/+310) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,509,469 | G→A | 100% | intergenic (‑45/‑159) | glk ← / → yfeO | glucokinase/putative ion channel protein |
| RA | 2,691,126 | Δ1 bp | 3.8% | intergenic (‑30/+29) | glrK ← / ← glmY | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR/sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,705,863:1 | +G | 4.1% | coding (1260/1800 nt) | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,705,863:2 | +T | 4.1% | coding (1260/1800 nt) | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,960,262 | Δ1 bp | 6.0% | coding (2165/3369 nt) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,977,578 | T→G | 100% | S328A (TCA→GCA) | galR → | galactose‑inducible d‑galactose regulon transcriptional repressor, autorepressor |
| RA | 3,045,996 | T→C | 5.6% | intergenic (‑97/+170) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| RA | 3,045,999 | C→T | 4.8% | intergenic (‑100/+167) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| RA | 3,046,000 | A→G | 5.6% | intergenic (‑101/+166) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| RA | 3,129,310 | C→T | 3.5% | pseudogene (832/1101 nt) | yghO ← | pseudogene, IS‑interrupted |
| RA | 3,173,645 | G→T | 3.4% | R584S (CGC→AGC) | parE ← | DNA topoisomerase IV, subunit B |
| RA | 3,769,672 | (A)8→7 | 100% | pseudogene (1/111 nt) | yibV → | pseudogene, putative cryptic Rhs immunity protein |
| MC JC | 3,815,858 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,875,537 | C→A | 12.1% | A34E (GCA→GAA) | yidX → | putative lipoprotein |
| RA | 3,876,894 | T→G | 5.8% | T20P (ACC→CCC) | yidA ← | sugar phosphate phosphatase |
| RA | 3,941,202 | T→C | 2.7% | E42G (GAG→GGG) | yieP ← | putative transcriptional regulator |
| MC JC | 4,001,644 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,053,569 | G→T | 5.7% | intergenic (+152/+77) | hemN → / ← yshB | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent/uncharacterized protein |
| RA | 4,184,542 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,296,189 | A→G | 32.0% | intergenic (+396/+248) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,190 | A→C | 32.3% | intergenic (+397/+247) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,267 | T→C | 17.4% | intergenic (+474/+170) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,614,504 | T→C | 5.9% | intergenic (+243/+177) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2533715 | 2536314 | 2600 | 22 [21] | [20] 23 | ptsH–[crr] | ptsH, ptsI, [crr] |
| * | * | ÷ | NC_000913 | 3423885–3424232 | 3424407–3424236 | 5–523 | 22 [21] | [21] 22 | rrlD | 23S ribosomal RNA of rrnD operon |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 151088 = | 60 (0.780) | 4 (0.050) | 4/488 | NT | 7.3% | coding (512/597 nt) | yadK | putative fimbrial‑like adhesin protein |
| ? | NC_000913 | 151321 = | 43 (0.580) | coding (279/597 nt) | yadK | putative fimbrial‑like adhesin protein | |||||
| * | ? | NC_000913 | 172704 = | 72 (0.940) | 4 (0.050) | 3/490 | NT | 5.5% | coding (1243/1983 nt) | fhuB | iron(3+)‑hydroxamate import ABC transporter permease |
| ? | NC_000913 | 173004 = | 69 (0.930) | coding (1543/1983 nt) | fhuB | iron(3+)‑hydroxamate import ABC transporter permease | |||||
| * | ? | NC_000913 | 227918 = | NA (NA) | 3 (0.040) | 3/494 | NT | NA | noncoding (2160/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 228067 = | NA (NA) | noncoding (2309/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 257908 = | NA (NA) | 74 (0.960) | 50/506 | NT | 100% | intergenic (+9/‑768) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | = 1293039 | 0 (0.000) | intergenic (‑117/‑488) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | = 381286 | 40 (0.520) | 3 (0.040) | 3/490 | NT | 7.2% | intergenic (‑26/‑65) | yaiX/insC1 | pseudogene, interrupted by IS2A, hexapeptide transferase superfamily, putative transferase/IS2 repressor TnpA |
| ? | NC_000913 | = 382564 | NA (NA) | coding (891/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913 | 387742 = | 76 (0.990) | 3 (0.040) | 3/496 | NT | 3.3% | coding (772/828 nt) | tauC | taurine ABC transporter permease |
| ? | NC_000913 | 387981 = | 102 (1.350) | coding (187/852 nt) | tauD | taurine dioxygenase, 2‑oxoglutarate‑dependent | |||||
| * | ? | NC_000913 | 392579 = | NA (NA) | 4 (0.050) | 4/480 | NT | 15.5% | coding (27/867 nt) | insF1 | IS3 transposase B |
| ? | NC_000913 | 392779 = | 23 (0.300) | coding (123/300 nt) | insE1 | IS3 transposase A | |||||
| * | ? | NC_000913 | 400148 = | 86 (1.120) | 4 (0.050) | 3/490 | NT | 4.5% | coding (776/1095 nt) | ddlA | D‑alanine‑D‑alanine ligase A |
| ? | NC_000913 | 400347 = | 85 (1.140) | coding (577/1095 nt) | ddlA | D‑alanine‑D‑alanine ligase A | |||||
| * | ? | NC_000913 | = 437541 | 62 (0.810) | 3 (0.040) | 3/496 | NT | 4.1% | coding (595/975 nt) | yajO | 2‑carboxybenzaldehyde reductase |
| ? | NC_000913 | = 438139 | 79 (1.050) | intergenic (‑4/+176) | yajO/dxs | 2‑carboxybenzaldehyde reductase/1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring | |||||
| * | ? | NC_000913 | = 459380 | 103 (1.340) | 4 (0.050) | 4/484 | NT | 4.0% | coding (493/2355 nt) | lon | DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | = 459622 | 95 (1.290) | coding (735/2355 nt) | lon | DNA‑binding ATP‑dependent protease La | |||||
| * | ? | NC_000913 | = 507531 | 70 (0.910) | 4 (0.050) | 4/498 | NT | 4.8% | coding (550/795 nt) | ybaP | TraB family protein |
| ? | NC_000913 | = 508645 | 90 (1.190) | noncoding (64/236 nt) | REP48 (repetitive extragenic palindromic) element, contains 5 REP sequences | REP48 (repetitive extragenic palindromic) element, contains 5 REP sequences | |||||
| * | ? | NC_000913 | 762116 = | 101 (1.310) | 5 (0.070) | 3/478 | NT | 4.5% | coding (595/1218 nt) | sucB | dihydrolipoyltranssuccinase |
| ? | NC_000913 | 762340 = | 117 (1.610) | coding (819/1218 nt) | sucB | dihydrolipoyltranssuccinase | |||||
| * | ? | NC_000913 | 1051218 = | 59 (0.770) | 4 (0.050) | 4/498 | NT | 6.6% | intergenic (‑43/‑243) | cspH/cspG | stress protein, member of the CspA‑family/cold shock protein homolog, cold‑inducible |
| ? | NC_000913 | 1051370 = | 56 (0.740) | intergenic (‑195/‑91) | cspH/cspG | stress protein, member of the CspA‑family/cold shock protein homolog, cold‑inducible | |||||
| * | ? | NC_000913 | 1138738 = | 98 (1.270) | 4 (0.050) | 4/488 | NT | 4.6% | coding (361/1644 nt) | flgK | flagellar hook‑filament junction protein 1 |
| ? | NC_000913 | 1139081 = | 73 (0.980) | coding (704/1644 nt) | flgK | flagellar hook‑filament junction protein 1 | |||||
| * | ? | NC_000913 | 1207790 = | 27 (0.350) | 41 (0.570) | 36/474 | NT | 62.5% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 24 (0.330) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 26 (0.340) | 55 (0.760) | 44/474 | NT | 69.5% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 24 (0.330) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1293032 = | 0 (0.000) | 71 (0.920) | 56/506 | NT | 100% | intergenic (‑110/‑495) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1328280 = | 59 (0.770) | 4 (0.050) | 4/492 | NT | 5.2% | coding (78/591 nt) | btuR | cob(I)yrinic acid a,c‑diamide adenosyltransferase |
| ? | NC_000913 | 1329071 = | 88 (1.180) | coding (42/759 nt) | yciK | putative EmrKY‑TolC system oxoacyl‑(acyl carrier protein) reductase | |||||
| * | ? | NC_000913 | 1681498 = | 103 (1.340) | 3 (0.040) | 3/494 | NT | 3.3% | coding (523/723 nt) | folM | dihydromonapterin reductase, NADPH‑dependent, dihydrofolate reductase isozyme |
| ? | NC_000913 | 1683437 = | 76 (1.010) | coding (556/1302 nt) | rstB | sensory histidine kinase of RstAB two‑component system | |||||
| * | ? | NC_000913 | = 1853917 | 44 (0.570) | 4 (0.050) | 4/502 | NT | 8.8% | coding (63/1359 nt) | ydjE | putative MFS sugar transporter, membrane protein |
| ? | NC_000913 | = 1854271 | 39 (0.510) | coding (584/759 nt) | ydjF | putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 30 (0.390) | 22/506 | NT | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 32 (0.420) | 26/506 | NT | 100% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | = 2029871 | 70 (0.910) | 3 (0.040) | 3/488 | NT | 3.6% | coding (333/921 nt) | yedA | amino acid exporter for phenylalanine, threonine |
| ? | NC_000913 | = 2031429 | 92 (1.240) | coding (889/1419 nt) | dcm | DNA cytosine methyltransferase | |||||
| * | ? | NC_000913 | = 2045253 | 73 (0.950) | 3 (0.040) | 3/482 | NT | 4.4% | coding (316/7077 nt) | yeeJ | putative adhesin |
| ? | NC_000913 | = 2045342 | 61 (0.830) | coding (405/7077 nt) | yeeJ | putative adhesin | |||||
| * | ? | NC_000913 | 2094173 = | 103 (1.340) | 3 (0.040) | 3/486 | NT | 3.2% | coding (706/1068 nt) | hisB | histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase |
| ? | NC_000913 | 2094488 = | 85 (1.150) | coding (1021/1068 nt) | hisB | histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase | |||||
| * | ? | NC_000913 | 2288917 = | NA (NA) | 69 (0.900) | 47/506 | NT | 100% | intergenic (‑5/+146) | yejO/insH1 | pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system/IS5 transposase and trans‑activator |
| ? | NC_000913 | 3526447 = | 0 (0.000) | intergenic (‑300/‑20) | nudE/yrfF | adenosine nucleotide hydrolase, Ap3A/Ap2A/ADP‑ribose/NADH hydrolase/putative RcsCDB‑response attenuator, inner membrane protein | |||||
| * | ? | NC_000913 | = 2290110 | NA (NA) | 80 (1.040) | 56/504 | NT | 100% | intergenic (‑31/+2) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system |
| ? | NC_000913 | = 3526451 | 0 (0.000) | intergenic (‑304/‑16) | nudE/yrfF | adenosine nucleotide hydrolase, Ap3A/Ap2A/ADP‑ribose/NADH hydrolase/putative RcsCDB‑response attenuator, inner membrane protein | |||||
| * | ? | NC_000913 | 2313534 = | 0 (0.000) | 59 (0.780) | 46/498 | NT | 100% | coding (49/2673 nt) | rcsD | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| ? | NC_000913 | = 2515611 | NA (NA) | intergenic (+170/+30) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase | |||||
| * | ? | NC_000913 | = 2313545 | 0 (0.000) | 46 (0.600) | 38/502 | NT | 100% | coding (60/2673 nt) | rcsD | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| ? | NC_000913 | 2514275 = | NA (NA) | intergenic (+33/‑54) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase | |||||
| * | ? | NC_000913 | = 2375834 | 63 (0.820) | 3 (0.040) | 3/500 | NT | 4.6% | coding (127/963 nt) | menC | O‑succinylbenzoyl‑CoA synthase |
| ? | NC_000913 | = 2515611 | NA (NA) | intergenic (+170/+30) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase | |||||
| * | ? | NC_000913 | = 2428230 | 76 (0.990) | 4 (0.050) | 4/492 | NT | 5.4% | coding (395/570 nt) | ubiX | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase |
| ? | NC_000913 | = 2428526 | 67 (0.900) | coding (99/570 nt) | ubiX | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase | |||||
| * | ? | NC_000913 | = 2657512 | 112 (1.460) | 3 (0.040) | 3/490 | NT | 3.2% | coding (1422/1851 nt) | hscA | DnaK‑like molecular chaperone specific for IscU |
| ? | NC_000913 | = 2657849 | 75 (1.010) | coding (1085/1851 nt) | hscA | DnaK‑like molecular chaperone specific for IscU | |||||
| * | ? | NC_000913 | 2793102 = | 82 (1.070) | 3 (0.040) | 3/496 | NT | 3.6% | coding (370/1281 nt) | gabT | 4‑aminobutyrate aminotransferase, PLP‑dependent |
| ? | NC_000913 | 2793123 = | 81 (1.070) | coding (391/1281 nt) | gabT | 4‑aminobutyrate aminotransferase, PLP‑dependent | |||||
| * | ? | NC_000913 | 3083425 = | 77 (1.000) | 4 (0.050) | 3/498 | NT | 4.5% | coding (371/921 nt) | speB | agmatinase |
| ? | NC_000913 | 3083638 = | 95 (1.260) | coding (158/921 nt) | speB | agmatinase | |||||
| * | ? | NC_000913 | 3440619 = | 99 (1.290) | 4 (0.050) | 4/490 | NT | 4.8% | coding (409/990 nt) | rpoA | RNA polymerase, alpha subunit |
| ? | NC_000913 | 3440886 = | 64 (0.860) | coding (142/990 nt) | rpoA | RNA polymerase, alpha subunit | |||||
| * | ? | NC_000913 | = 3798186 | 11 (0.140) | 4 (0.050) | 4/496 | NT | 27.8% | coding (1240/1260 nt) | waaL | O‑antigen ligase |
| ? | NC_000913 | = 3798668 | 10 (0.130) | coding (644/1074 nt) | waaU | lipopolysaccharide core biosynthesis | |||||
| * | ? | NC_000913 | 3845530 = | 71 (0.920) | 78 (1.060) | 59/486 | NT | 52.7% | coding (1568/1767 nt) | adeD | cryptic adenine deaminase |
| ? | NC_000913 | = 3992759 | 72 (0.980) | coding (1608/2547 nt) | cyaA | adenylate cyclase | |||||
| * | ? | NC_000913 | = 3890129 | 180 (2.340) | 6 (0.080) | 6/496 | NT | 3.2% | coding (1401/1416 nt) | tnaA | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| ? | NC_000913 | = 3890267 | 192 (2.550) | coding (33/1248 nt) | tnaB | tryptophan transporter of low affinity | |||||
| * | ? | NC_000913 | 3895549 = | 187 (2.430) | 7 (0.090) | 7/500 | NT | 3.9% | coding (1060/1338 nt) | adeP | adenine permease, high affinity, adenine:H+ symporter |
| ? | NC_000913 | 3896008 = | 164 (2.160) | coding (601/1338 nt) | adeP | adenine permease, high affinity, adenine:H+ symporter | |||||
| * | ? | NC_000913 | 3955660 = | 196 (2.550) | 8 (0.110) | 7/494 | NT | 4.3% | coding (331/1545 nt) | ilvA | l‑threonine dehydratase, biosynthetic, also known as threonine deaminase |
| ? | NC_000913 | 3955903 = | 161 (2.140) | coding (574/1545 nt) | ilvA | l‑threonine dehydratase, biosynthetic, also known as threonine deaminase | |||||
| * | ? | NC_000913 | = 3981100 | 139 (1.810) | 4 (0.050) | 4/488 | NT | 2.9% | coding (215/1386 nt) | yifK | putative APC family amino acid transporter |
| ? | NC_000913 | = 3981101 | 134 (1.810) | coding (216/1386 nt) | yifK | putative APC family amino acid transporter | |||||
| * | ? | NC_000913 | = 4214795 | 65 (0.850) | 6 (0.080) | 4/484 | NT | 8.4% | coding (517/930 nt) | metA | homoserine O‑transsuccinylase |
| ? | NC_000913 | = 4214986 | 69 (0.940) | coding (708/930 nt) | metA | homoserine O‑transsuccinylase | |||||
| * | ? | NC_000913 | = 4316713 | 69 (0.900) | 3 (0.040) | 3/500 | NT | 4.0% | coding (507/1137 nt) | phnM | ribophosphonate triphosphate hydrolase |
| ? | NC_000913 | = 4316798 | 76 (1.000) | coding (422/1137 nt) | phnM | ribophosphonate triphosphate hydrolase | |||||