Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 1 1
12 1 1
12 12 12

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 1317 1487
Multiple Base Substitutions 0 0
Deletions 125 211
Insertions 136 202
Mobile Element Insertions 2 13
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 1580 1913

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 143 0 98.3 3330986 99.3% 3307669 138.3
A2 F28 I1 R1 129 0 74.0 2524844 99.2% 2504645 138.6
A3 F28 I1 R1 169 0 80.7 2736954 99.0% 2709584 138.6
A4 F28 I1 R1 164 0 66.7 2276140 99.1% 2255654 138.7
A5 F28 I1 R1 139 0 58.0 1973578 98.9% 1951868 138.2
A6 F28 I1 R1 116 0 49.4 1663006 99.2% 1649701 139.1
A7 F28 I1 R1 252 0 48.5 1661298 98.8% 1641362 138.6
A8 F28 I1 R1 145 0 97.8 3401598 99.2% 3374385 138.5
A9 F28 I1 R1 126 0 206.4 6980590 99.2% 6924745 138.5
A10 F28 I1 R1 126 0 51.4 1736588 99.0% 1719222 138.7
A11 F28 I1 R1 228 0 65.7 2434974 91.7% 2232871 138.5
A12 F28 I1 R1 176 0 31.5 1082462 98.8% 1069472 138.9

Mutation Needle Plot

Mutation Targets

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