mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 23,273 | A→G | T295A (ACG→GCG) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 78,395 | A→G | T259A (ACG→GCG) | setA → | sugar exporter SetA |
| RA | 146,404 | T→C | E97E (GAA→GAG) | panD ← | aspartate 1‑decarboxylase proenzyme |
| RA | 163,723 | G→A | G540D (GGC→GAC) | hrpB → | putative ATP‑dependent RNA helicase HrpB |
| RA | 244,295 | (G)5→6 | intergenic (+174/‑32) | lpcA → / → yafJ | D‑sedoheptulose 7‑phosphate isomerase/putative amidotransferase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 265,689 | C→T | G133G (GGG→GGA) | ykfB ← | CP4‑6 prophage; protein YkfB |
| RA | 281,623 | C→T | G121S (GGC→AGC) | yagA ← | CP4‑6 prophage; integrase core domain‑containing protein YagA |
| RA | 308,745 | C→T | S196S (TCG→TCA) | ecpC ← | putative fimbrial usher protein EcpC |
| RA | 312,738 | A→G | F14L (TTC→CTC) | ykgM ← | putative ribosomal protein |
| RA | 361,790 | (T)6→7 | coding (71/612 nt) | lacA ← | galactoside O‑acetyltransferase |
| RA | 397,808 | A→G | E390E (GAA→GAG) | sbmA → | peptide antibiotic/peptide nucleic acid transporter |
| RA | 425,133 | T→C | G41G (GGT→GGC) | queA → | tRNA preQ1(34) S‑adenosylmethionine ribosyltransferase‑isomerase |
| RA | 468,565 | C→T | G61G (GGC→GGT) | decR → | DNA‑binding transcriptional activator DecR |
| RA | 504,535 | T→C | E54E (GAA→GAG) | fsr ← | fosmidomycin efflux pump |
| RA | 522,702 | T→C | W763R (TGG→CGG) | ybbP → | putative ABC transporter membrane subunit YbbP |
| RA | 527,577 | T→C | intergenic (+36/‑4) | rhsD → / → ybbC | protein RhsD/PF15631 family protein YbbC |
| RA | 532,643 | C→T | P65S (CCG→TCG) | allA → | ureidoglycolate lyase |
| RA | 542,589 | A→G | Q234Q (CAA→CAG) | glxK → | glycerate 2‑kinase 2 |
| RA | 548,703 | A→G | N116S (AAC→AGC) | ylbE → | DUF1116 domain‑containing protein YlbE |
| RA | 557,620 | A→G | V41A (GTG→GCG) | folD ← | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase/ 5,10‑methylene‑tetrahydrofolate cyclohydrolase |
| RA | 560,634 | T→C | V313A (GTT→GCT) | sfmD → | putative fimbrial usher protein SfmD |
| RA | 566,769 | C→T | pseudogene (86/93 nt) | renD → | DLP12 prophage; protein RenD |
| RA | 578,910 | C→T | intergenic (‑17/+274) | borD ← / ← ybcV | DLP12 prophage; prophage lipoprotein BorD/DLP12 prophage; protein YbcV |
| RA | 616,675 | A→G | D840G (GAC→GGC) | entF → | apo‑serine activating enzyme |
| RA | 682,783 | T→C | E204G (GAA→GGA) | hscC ← | chaperone protein HscC |
| RA | 683,337 | A→G | I19I (ATT→ATC) | hscC ← | chaperone protein HscC |
| RA | 697,972 | A→G | V402V (GTT→GTC) | asnB ← | asparagine synthetase B |
| RA | 700,331 | T→C | intergenic (‑5/+43) | umpH ← / ← nagC | UMP phosphatase/DNA‑binding transcriptional dual regulator NagC |
| RA | 724,628 | C→T | V118I (GTT→ATT) | kdpC ← | K(+) transporting P‑type ATPase subunit KdpC |
| RA | 737,765 | A→G | pseudogene (866/1062 nt) | ybfL → | putative transposase YbfL |
| RA | 781,828 | Δ1 bp | intergenic (+176/‑257) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase |
| RA | 782,737 | A→G | Y218C (TAC→TGC) | nadA → | quinolinate synthase |
| RA | 794,285 | A→G | R120R (CGT→CGC) | modE ← | DNA‑binding transcriptional dual regulator ModE |
| RA | 828,947 | (T)5→4 | coding (35/1737 nt) | ybhF ← | putative ABC exporter ATP binding subunit |
| RA | 868,422 | (C)8→7 | coding (903/1872 nt) | gsiA → | glutathione ABC transporter ATP binding subunit GsiA |
| RA | 885,736 | A→G | R132R (CGT→CGC) | ybjI ← | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 937,408 | A→G | S13G (AGC→GGC) | lolA → | outer membrane lipoprotein carrier protein |
| RA | 959,171 | T→C | R120R (CGT→CGC) | aroA → | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| RA | 962,837 | T→C | T281T (ACT→ACC) | rpsA → | 30S ribosomal subunit protein S1 |
| RA | 984,521 | A→G | *397Q (TAA→CAA) | aspC ← | aspartate aminotransferase |
| RA | 985,407 | (C)6→8 | coding (303/1191 nt) | aspC ← | aspartate aminotransferase |
| RA | 1,010,898 | C→T | A312V (GCC→GTC) | uup → | ATP‑binding protein with possible role in replication |
| RA | 1,045,760 | A→G | V15A (GTT→GCT) | gfcE ← | putative exopolysaccharide export lipoprotein GfcE |
| JC | 1,093,358 | (G)6→9 | coding (483/1359 nt) | dgcT → | putative diguanylate cyclase DgcT |
| RA | 1,108,336 | C→T | P202P (CCG→CCA) | opgC ← | protein required for succinyl modification of osmoregulated periplasmic glucans |
| RA | 1,128,427 | G→A | G197S (GGC→AGC) | murJ → | putative lipid II flippase MurJ |
| RA | 1,143,140 | T→C | T410A (ACT→GCT) | rne ← | ribonuclease E |
| RA | 1,220,971 | G→A | pseudogene (1371/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,238,760 | T→C | L397P (CTG→CCG) | dadA → | D‑amino acid dehydrogenase |
| RA | 1,302,122 | G→A | R314H (CGT→CAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,436,731 | T→C | S55G (AGC→GGC) | ompN ← | outer membrane porin N |
| RA | 1,541,351 | C→T | E414K (GAA→AAA) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,611,401 | T→C | T152A (ACT→GCT) | dgcF ← | putative diguanylate cyclase DgcF |
| RA | 1,660,030 | T→C | R654R (CGT→CGC) | ynfE → | putative selenate reductase YnfE |
| RA | 1,685,542 | (C)6→5 | coding (1047/1404 nt) | fumC ← | fumarase C |
| RA | 1,710,486 | A→G | T95A (ACC→GCC) | rsxG → | SoxR [2Fe‑2S] reducing system protein RsxG |
| RA | 1,755,515 | G→A | intergenic (‑374/‑183) | fumD ← / → pykF | fumarase D/pyruvate kinase I |
| RA | 1,761,634 | G→A | P53L (CCG→CTG) | sufD ← | Fe‑S cluster scaffold complex subunit SufD |
| RA | 1,771,496 | A→G | G142G (GGA→GGG) | ydiM → | putative exporter YdiM |
| RA | 1,815,801 | T→C | G645G (GGT→GGC) | katE → | catalase II |
| RA | 1,820,296 | T→C | S307G (AGT→GGT) | chbC ← | N,N'‑diacetylchitobiose‑specific PTS enzyme IIC component |
| RA | 1,843,829 | G→A | intergenic (+115/+2) | gdhA → / ← ynjI | glutamate dehydrogenase/DUF1266 domain‑containing protein YnjI |
| RA | 1,873,384 | A→G | K448K (AAA→AAG) | dgcJ → | putative diguanylate cyclase DgcJ |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,889,776 | T→C | intergenic (‑30/+175) | fadD ← / ← yeaY | fatty acyl‑CoA synthetase/Slp family lipoprotein YeaY |
| RA | 1,902,492 | G→A | A149T (GCT→ACT) | manX → | mannose‑specific PTS enzyme IIAB component |
| RA | 1,948,451 | A→G | V61A (GTC→GCC) | nudB ← | dihydroneopterin triphosphate diphosphatase |
| RA | 1,956,138 | T→C | K290K (AAA→AAG) | torZ ← | trimethylamine N‑oxide reductase 2 |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 1,999,385 | T→C | G32G (GGA→GGG) | dcyD ← | D‑cysteine desulfhydrase |
| RA | 2,022,295 | C→T | R143C (CGT→TGT) | fliP → | flagellar biosynthesis protein FliP |
| RA | 2,080,189 | T→C | T135A (ACA→GCA) | yeeA ← | putative transporter YeeA |
| RA | 2,082,980 | G→A | R75R (CGG→CGA) | sbcB → | exodeoxyribonuclease I |
| RA | 2,117,718 | G→A | D229D (GAC→GAT) | wcaK ← | putative colanic acid biosynthesis pyruvyl transferase |
| RA | 2,168,469 | (G)5→6 | intergenic (‑163/‑243) | yegR ← / → yegS | uncharacterized protein YegR/lipid kinase |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,181,744 | G→A | A217T (GCA→ACA) | yegV → | putative sugar kinase YegV |
| RA | 2,196,727 | T→C | V85A (GTA→GCA) | yehF → | putative protein YehF |
| RA | 2,211,471 | G→A | A83T (GCC→ACC) | yehR → | DUF1307 domain‑containing lipoprotein YehR |
| RA | 2,216,679 | G→A | R243R (CGC→CGT) | yehX ← | glycine betaine ABC transporter ATP binding subunit YehX |
| RA | 2,262,984 | T→C | N171S (AAC→AGC) | fruB ← | fructose‑specific PTS multiphosphoryl transfer protein FruB |
| RA | 2,276,357 | A→G | T20A (ACC→GCC) | yejF → | putative oligopeptide ABC transporter ATP binding subunit |
| RA | 2,338,468 | T→C | N318S (AAC→AGC) | gyrA ← | DNA gyrase subunit A |
| RA | 2,375,217 | A→G | V249A (GTA→GCA) | menC ← | o‑succinylbenzoate synthase |
| RA | 2,426,387 | T→C | K134K (AAA→AAG) | hisJ ← | histidine ABC transporter periplasmic binding protein |
| RA | 2,429,397 | G→A | T281M (ACG→ATG) | purF ← | amidophosphoribosyltransferase |
| RA | 2,432,226 | G→A | S239S (AGC→AGT) | folC ← | bifunctional folylpolyglutamate synthetase/dihydrofolate synthetase |
| RA | 2,446,579 | T→C | T299A (ACC→GCC) | aroC ← | chorismate synthase |
| RA | 2,455,873 | G→A | intergenic (‑227/+454) | yfcV ← / ← sixA | putative fimbrial protein YfcV/phosphohistidine phosphatase |
| RA | 2,456,234 | A→G | intergenic (‑588/+93) | yfcV ← / ← sixA | putative fimbrial protein YfcV/phosphohistidine phosphatase |
| RA | 2,471,866 | A→G | pseudogene (197/519 nt) | yfdL ← | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YfdL |
| RA | 2,527,823 | T→C | V293A (GTG→GCG) | yfeH → | putative solute:Na(+) symporter |
| RA | 2,602,017 | (C)7→8 | coding (200/2019 nt) | hyfB → | hydrogenase 4 component B |
| RA | 2,656,054 | T→C | N102S (AAC→AGC) | pepB ← | aminopeptidase B |
| RA | 2,693,457 | G→A | A696V (GCG→GTG) | purL ← | phosphoribosylformylglycinamide synthetase |
| RA | 2,717,568 | C→T | G321S (GGC→AGC) | yfiF ← | putative methyltransferase |
| RA | 2,735,938 | G→A | A25V (GCC→GTC) | rluD ← | 23S rRNA pseudouridine(1911/1915/1917) synthase |
| RA | 2,749,698 | T→C | Y309H (TAT→CAT) | yfjD → | putative inner membrane protein |
| RA | 2,767,507 | (C)7→9 | intergenic (+152/‑203) | rnlB → / → yfjP | CP4‑57 prophage; antitoxin RnlB/CP4‑57 prophage; putative GTP‑binding protein YfjP |
| RA | 2,773,416 | (T)8→7 | coding (99/1704 nt) | yfjW → | CP4‑57 prophage; uncharacterized protein YfjW |
| RA | 2,776,702 | T→C | I106T (ATA→ACA) | yfjY → | CP4‑57 prophage; RadC‑like JAB domain‑containing protein YfjY |
| RA | 2,793,716 | G→A | G328R (GGG→AGG) | gabT → | 4‑aminobutyrate aminotransferase GabT |
| RA | 2,811,134 | A→G | H122R (CAC→CGC) | mprA → | DNA‑binding transcriptional repressor MprA |
| RA | 2,828,224 | G→A | G163E (GGG→GAG) | srlD → | sorbitol‑6‑phosphate 2‑dehydrogenase |
| RA | 2,852,333 | T→C | G66G (GGT→GGC) | hypD → | Fe‑(CN)2CO cofactor assembly scaffold protein HypD |
| MC JC | 2,857,096 | Δ2,538 bp | coding (4‑2541/2562 nt) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,883,098 | (C)6→7 | coding (1041/1509 nt) | casA ← | type I‑E CRISPR system Cascade subunit CasA |
| RA | 2,884,500 | G→A | intergenic (‑362/+53) | casA ← / ← cas3 | type I‑E CRISPR system Cascade subunit CasA/CRISPR‑associated endonuclease/helicase Cas3 |
| RA | 2,937,868 | T→C | F134S (TTC→TCC) | fucK → | L‑fuculokinase |
| RA | 2,942,901 | (T)8→7 | intergenic (+1/+17) | gcvB → / ← ygdI | small regulatory RNA GcvB/DUF903 domain‑containing lipoprotein YgdI |
| RA | 2,943,712 | T→C | W126R (TGG→CGG) | csdA → | cysteine sulfinate desulfinase |
| RA | 2,949,993 | (T)5→6 | coding (752/1332 nt) | argA → | N‑acetylglutamate synthase |
| RA | 2,950,940 | T→C | T508A (ACG→GCG) | recD ← | exodeoxyribonuclease V subunit RecD |
| RA | 3,014,973 | (C)6→7 | coding (85/771 nt) | yqeC ← | uncharacterized protein YqeC |
| RA | 3,068,157 | T→C | intergenic (‑77/+16) | yggE ← / ← argO | uncharacterized protein YggE/L‑arginine exporter |
| RA | 3,123,682 | T→C | I42V (ATC→GTC) | glcB ← | malate synthase G |
| RA | 3,142,974 | T→C | T6A (ACT→GCT) | hybC ← | hydrogenase 2 large subunit |
| RA | 3,148,684 | A→G | N263S (AAC→AGC) | gpr → | L‑glyceraldehyde 3‑phosphate reductase |
| RA | 3,155,841 | T→C | F163L (TTC→CTC) | yqhD → | NADPH‑dependent aldehyde reductase YqhD |
| RA | 3,177,829 | (A)7→6 | coding (82/630 nt) | nudF ← | ADP‑sugar pyrophosphatase |
| RA | 3,196,990 | T→C | E884E (GAA→GAG) | glnE ← | fused glutamine synthetase deadenylase/glutamine synthetase adenylyltransferase |
| RA | 3,201,912 | G→A | G8S (GGT→AGT) | cca → | fused tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase and phosphatase |
| RA | 3,208,223 | T→C | I67T (ATA→ACA) | ttdT → | L‑tartrate:succinate antiporter |
| RA | 3,225,837 | A→G | H39R (CAC→CGC) | ebgC → | DUF386 domain‑containing evolved beta‑D‑galactosidase subunit beta |
| RA | 3,233,478 | T→C | L605P (CTG→CCG) | fadH → | 2,4‑dienoyl‑CoA reductase |
| RA | 3,233,669 | G→A | A669T (GCG→ACG) | fadH → | 2,4‑dienoyl‑CoA reductase |
| RA | 3,237,401 | G→A | V31I (GTA→ATA) | ygjR → | putative oxidoreductase YgjR |
| RA | 3,281,585 | T→C | pseudogene (464/504 nt) | agaA → | putative truncated N‑acetylgalactosamine‑6‑phosphate deacetylase |
| RA | 3,299,839 | T→C | E26G (GAA→GGA) | yhbP ← | putative FMN binding protein YhbP |
| RA | 3,320,534 | C→T | L360L (CTG→CTA) | yhbX ← | putative hydrolase, inner membrane |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,388,726 | A→G | V134A (GTT→GCT) | aaeA ← | aromatic carboxylic acid efflux pump membrane fusion protein |
| RA | 3,404,262 | T→C | V260A (GTC→GCC) | yhdH → | acrylyl‑CoA reductase |
| RA | 3,446,311 | T→C | S79G (AGC→GGC) | rpsH ← | 30S ribosomal subunit protein S8 |
| RA | 3,546,408 | T→C | intergenic (+209/‑151) | nfuA → / → gntT | iron‑sulfur cluster carrier protein NfuA/high‑affinity gluconate transporter |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,574,808 | T→C | E24G (GAG→GGG) | asd ← | aspartate‑semialdehyde dehydrogenase |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,833,177 | T→C | D454G (GAC→GGC) | yicI ← | alpha‑D‑xyloside xylohydrolase |
| RA | 3,860,630 | (C)5→4 | coding (348/894 nt) | yidL → | putative DNA‑binding transcriptional regulator YidL |
| RA | 3,931,183 | (G)7→8 | intergenic (‑90/‑133) | ravA ← / → kup | regulatory ATPase RavA/K(+):H(+) symporter Kup |
| RA | 3,961,617 | T→C | V314A (GTA→GCA) | rep → | ATP‑dependent DNA helicase Rep |
| RA | 4,011,323 | C→T | T83M (ACG→ATG) | bioP → | biotin transporter |
| RA | 4,054,887 | A→G | V131A (GTT→GCT) | glnG ← | DNA‑binding transcriptional dual regulator NtrC |
| RA | 4,231,149 | (A)6→5 | coding (796/873 nt) | rluF → | 23S rRNA pseudouridine(2604) and tRNA(Tyr) pseudouridine(35) synthase |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,307,957 | A→G | G174G (GGT→GGC) | alsE ← | D‑allulose‑6‑phosphate 3‑epimerase |
| RA | 4,330,149 | A→G | T264A (ACT→GCT) | yjcZ → | uncharacterized protein YjcZ |
| RA | 4,364,285 | G→C | T253S (ACC→AGC) | dsbD ← | protein disulfide oxidoreductase ‑ DsbDreduced |
| RA | 4,372,570 | A→G | T516A (ACC→GCC) | groL → | chaperonin GroEL |
| RA | 4,399,552 | A→G | I101V (ATC→GTC) | miaA → | tRNA dimethylallyltransferase |
| RA | 4,445,549 | A→G | T480A (ACC→GCC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,448,745 | T→A | D18E (GAT→GAA) | chpB → | endoribonuclease toxin ChpB |
| RA | 4,452,023 | A→G | K322K (AAA→AAG) | ytfR → | galactofuranose ABC transporter putative ATP binding subunit |
| RA | 4,454,722 | A→G | R296R (CGT→CGC) | fbp ← | fructose‑1,6‑bisphosphatase 1 |
| RA | 4,512,124 | (C)5→6 | coding (291/957 nt) | fecD ← | ferric citrate ABC transporter membrane subunit FecD |
| RA | 4,589,904 | A→G | V459A (GTC→GCC) | btsT ← | pyruvate:H(+) symporter |
| RA | 4,606,094 | (G)8→9 | noncoding (72/87 nt) | leuV ← | tRNA‑Leu |
| RA | 4,606,330 | (G)8→9 | noncoding (72/87 nt) | leuQ ← | tRNA‑Leu |
| RA | 4,630,068 | C→T | R152H (CGT→CAT) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,634,127 | A→G | T111A (ACC→GCC) | ytjC → | putative phosphatase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1633305–1633620 | 1634911–1634644 | 1025–1607 | 19 [15] | [16] 20 | [ydfK]–[ydfN] | [ydfK],pinQ,tfaQ,[ydfN] |
| * | * | ÷ | NC_000913 | 3423768–3424234 | 3424528–3424238 | 5–761 | 18 [16] | [16] 20 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 374921 = | NA (NA) | 54 (1.180) | 19/190 | 1.2 | NA | intergenic (+40/‑538) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377531 = | NA (NA) | intergenic (+220/+4) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 374963 | NA (NA) | 46 (1.000) | 17/190 | 1.4 | NA | noncoding (33/34 nt) | other | REP31a |
| ? | NC_000913 | = 377487 | NA (NA) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 375023 = | NA (NA) | 13 (0.280) | 11/192 | 2.5 | NA | intergenic (+142/‑436) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377530 = | NA (NA) | intergenic (+219/+5) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 375102 = | NA (NA) | 32 (0.610) | 11/216 | 2.9 | NA | noncoding (17/36 nt) | other | REP31d |
| ? | NC_000913 | 377351 = | NA (NA) | noncoding (16/37 nt) | other | REP32a | |||||
| * | ? | NC_000913 | 375183 = | NA (NA) | 23 (0.400) | 14/238 | 2.6 | NA | intergenic (+302/‑276) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377372 = | NA (NA) | noncoding (37/37 nt) | other | REP32a | |||||
| * | ? | NC_000913 | 375203 = | NA (NA) | 31 (0.590) | 14/216 | 2.3 | NA | noncoding (17/36 nt) | other | REP31f |
| ? | NC_000913 | 377351 = | NA (NA) | noncoding (16/37 nt) | other | REP32a | |||||
| * | ? | NC_000913 | 1207790 = | 11 (0.160) | 66 (1.120) | 41/244 | 0.3 | 86.4% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 11 (0.190) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 11 (0.160) | 45 (0.760) | 34/244 | 0.5 | 81.3% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 11 (0.190) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 67 (1.030) | 43/268 | 0.3 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 121 (1.810) | 119 (1.800) | 61/274 | 0.1 | 66.3% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 1 (0.020) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 59 (0.880) | 40/276 | 0.5 | 95.2% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 3 (0.040) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | 4542682 = | 41 (0.610) | 17 (0.270) | 16/258 | 2.5 | 27.8% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 50 (0.800) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||