BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	578,910	C→T	intergenic (‑17/+274)	borD ← / ← ybcV	DLP12 prophage; prophage lipoprotein BorD/DLP12 prophage; protein YbcV

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	578,910	0	C	T	100.0%	387.7 / NA	111	intergenic (‑17/+274)	borD/ybcV	DLP12 prophage; prophage lipoprotein BorD/DLP12 prophage; protein YbcV
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (54/57); total (54/57)

Only 100 of 115 total aligned reads displayed.

ATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATG  >  NC_000913/578774‑579045

     gggTGATGGTTTCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGaa                                                                                                                                 <  1:784240/140‑1 (MQ=255)

     gggTGATGGTTTCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGaa                                                                                                                                 <  2:2574/140‑1 (MQ=255)

     gggTGATGGTTTCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGaa                                                                                                                                 >  1:226081/1‑140 (MQ=255)

      ggTGATGGTTTCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAg                                                                                                                                >  1:77732/1‑140 (MQ=255)

       gTGATGGTTTCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGt                                                                                                                               <  1:657928/140‑1 (MQ=255)

          aTGGTTTCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCg                                                                                                                            <  1:1005084/140‑1 (MQ=255)

          aTGGTTTCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCg                                                                                                                            <  2:810444/140‑1 (MQ=255)

          aTGGTTTCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCg                                                                                                                            <  1:387345/140‑1 (MQ=255)

          aTGGTTTCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCg                                                                                                                            >  2:1125998/1‑140 (MQ=255)

           tGGTTTCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACGGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGGGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGc                                                                                                                           >  2:405178/1‑140 (MQ=255)

           tGGTTTCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGc                                                                                                                           <  1:312511/140‑1 (MQ=255)

            ggTTTCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCa                                                                                                                          >  1:957174/1‑140 (MQ=255)

              tttCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGa                                                                                                                        <  1:459446/140‑1 (MQ=255)

                tCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAAt                                                                                                                      <  2:226081/140‑1 (MQ=255)

                  cTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCg                                                                                                                    >  2:75996/1‑140 (MQ=255)

                     tGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTAt                                                                                                                 >  2:533559/1‑140 (MQ=255)

                       gTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGc                                                                                                                           <  2:182742/128‑1 (MQ=255)

                       gTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGc                                                                                                                           >  1:182742/1‑128 (MQ=255)

                        tGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGt                                                                                                                   <  1:292841/135‑1 (MQ=255)

                        tGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGt                                                                                                                   >  2:292841/1‑135 (MQ=255)

                        tGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTAtgtg                                                                                                              >  2:881388/1‑140 (MQ=255)

                        tGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTAtgt                                                                                                               >  2:524658/1‑139 (MQ=255)

                        tGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTAtgt                                                                                                               <  1:524658/139‑1 (MQ=255)

                          cTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTa                                                                                                            <  1:698127/140‑1 (MQ=255)

                          cTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTa                                                                                                            <  1:1025847/140‑1 (MQ=255)

                            aCTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGt                                                                                                                   <  1:1097794/131‑1 (MQ=255)

                            aCTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGt                                                                                                                   >  2:1097794/1‑131 (MQ=255)

                            aCTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTAt                                                                                                                 >  1:105040/1‑133 (MQ=255)

                            aCTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTAt                                                                                                                 <  2:105040/133‑1 (MQ=255)

                                  gtctgtTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTa                                                                                                    >  2:549952/1‑140 (MQ=255)

                                  gtctgtTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTa                                                                                                    >  2:667396/1‑140 (MQ=255)

                                  gtctgtTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTa                                                                                                    >  2:341455/1‑140 (MQ=255)

                                  gtctgtTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTa                                                                                                    >  1:1107106/1‑140 (MQ=255)

                                     tgtttgttTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCTATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTaaac                                                                                                 >  2:235865/1‑140 (MQ=255)

                                     tgtttgttTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTaaac                                                                                                 <  1:1125998/140‑1 (MQ=255)

                                     tgtttgttTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTaaac                                                                                                 <  1:162277/140‑1 (MQ=255)

                                       tttgtttTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTaaacaa                                                                                               <  2:957174/140‑1 (MQ=255)

                                       tttgtttTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTaaacaa                                                                                               <  2:320351/140‑1 (MQ=255)

                                       tttgtttTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTaaaca                                                                                                >  2:264901/1‑139 (MQ=255)

                                       tttgtttTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTaaaca                                                                                                <  1:264901/139‑1 (MQ=255)

                                             ttGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTa                                                                                         >  2:852618/1‑140 (MQ=255)

                                                 aCAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACa                                                                                     >  1:1056789/1‑140 (MQ=255)

                                                     tAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACa                                                                                     <  1:1091579/136‑1 (MQ=255)

                                                     tAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGa                                                                                 >  1:760542/1‑140 (MQ=255)

                                                             tGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAAt                                                                         >  1:639481/1‑140 (MQ=255)

                                                               ttGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAAttt                                                                       >  2:243983/1‑140 (MQ=255)

                                                               ttGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAAttt                                                                       <  2:639481/140‑1 (MQ=255)

                                                                 gAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCa                                                                     <  2:221975/140‑1 (MQ=255)

                                                                  aGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCat                                                                    <  2:1044595/140‑1 (MQ=255)

                                                                   gCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCata                                                                   <  2:1056789/140‑1 (MQ=255)

                                                                    cacaTCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGTTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCatat                                                                  >  2:777366/1‑140 (MQ=255)

                                                                       aTCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGt                                                               <  2:277958/140‑1 (MQ=255)

                                                                         ccTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTa                                                             >  1:103527/1‑140 (MQ=255)

                                                                         ccTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTa                                                             <  2:1107106/140‑1 (MQ=255)

                                                                           tGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAat                                                           <  1:852618/140‑1 (MQ=255)

                                                                           tGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAat                                                           <  2:511529/140‑1 (MQ=255)

                                                                            gTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAata                                                          <  2:77732/140‑1 (MQ=255)

                                                                            gTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAata                                                          >  2:952597/1‑140 (MQ=255)

                                                                                 aaGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAAtatttat                                                     <  1:443700/140‑1 (MQ=255)

                                                                                 aaGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAAtatttat                                                     <  2:1089895/140‑1 (MQ=255)

                                                                                   gCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAAtatt                                                        >  1:558555/1‑135 (MQ=255)

                                                                                   gCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAAtatt                                                        <  2:558555/135‑1 (MQ=255)

                                                                                   gCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATttatta                                                   >  2:459284/1‑140 (MQ=255)

                                                                                    cAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTaa                                                  >  1:604804/1‑140 (MQ=255)

                                                                                    cAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTaa                                                  <  1:928252/140‑1 (MQ=255)

                                                                                     aGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAAt                                                 >  1:975549/1‑140 (MQ=255)

                                                                                     aGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGCGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAAt                                                 >  2:251280/1‑140 (MQ=255)

                                                                                       ggCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTa                                                             <  1:620718/126‑1 (MQ=255)

                                                                                       ggCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTa                                                             <  2:952102/126‑1 (MQ=255)

                                                                                       ggCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTa                                                             >  1:952102/1‑126 (MQ=255)

                                                                                       ggCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTa                                                             >  2:620718/1‑126 (MQ=255)

                                                                                       ggCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAAtatttat                                                     <  2:973663/134‑1 (MQ=255)

                                                                                       ggCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGt                                               >  1:140523/1‑140 (MQ=255)

                                                                                       ggCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGt                                               >  2:15109/1‑140 (MQ=255)

                                                                                       ggCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGt                                               >  2:1000898/1‑140 (MQ=255)

                                                                                       ggCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGt                                               >  1:576072/1‑140 (MQ=255)

                                                                                       ggCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGt                                               >  1:878321/1‑140 (MQ=255)

                                                                                               cAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAgg                                       <  2:813900/140‑1 (MQ=255)

                                                                                                 gTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTg                                     >  2:616690/1‑140 (MQ=255)

                                                                                                    gCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGa                                  <  2:677953/140‑1 (MQ=255)

                                                                                                       aGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGa                               <  1:667396/140‑1 (MQ=255)

                                                                                                       aGTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAAGTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGa                               >  2:1047108/1‑140 (MQ=255)

                                                                                                       aGTAGCATTTTTTTCATGGCGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATCGTTAATATTTATTAATGTATGCCAGGTGCGATGa                               >  2:707736/1‑140 (MQ=255)

                                                                                                        gTAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGaa                              <  1:536977/140‑1 (MQ=255)

                                                                                                         tAGCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAAt                             <  2:604804/140‑1 (MQ=255)

                                                                                                           gCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCg                           <  1:1000898/140‑1 (MQ=255)

                                                                                                           gCATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCg                           <  1:75996/140‑1 (MQ=255)

                                                                                                            cATTTTTTTCATGGTGTTATTCCCTATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGt                          <  1:235865/140‑1 (MQ=255)

                                                                                                            cATTTTTTTCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAAt                             <  1:220627/137‑1 (MQ=255)

                                                                                                                 ttttCATGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAAGCGTATGTGTAGAAAATTAAACAACCCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGCCATTg                     <  2:141465/140‑1 (MQ=255)

                                                                                                                      aTGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTc                <  1:68119/140‑1 (MQ=255)

                                                                                                                      aTGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTc                <  1:952597/140‑1 (MQ=255)

                                                                                                                       tGGTGTTATTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTcc               <  1:616690/140‑1 (MQ=255)

                                                                                                                              aTTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTa        <  1:881388/140‑1 (MQ=255)

                                                                                                                              aTTCCCGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTa        <  1:549952/140‑1 (MQ=255)

                                                                                                                                 cccGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACt     >  1:1046240/1‑140 (MQ=255)

                                                                                                                                   cGATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGATGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTAt   <  2:657021/140‑1 (MQ=255)

                                                                                                                                    gATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATg  >  2:79325/1‑140 (MQ=255)

                                                                                                                                    gATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATg  >  2:237232/1‑140 (MQ=255)

                                                                                                                                    gATGTTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGAGCGATTAATCGTCATTGTATTCCCGGATTAACTATg  >  2:417023/1‑140 (MQ=255)

ATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAATGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGCAGTAGCGAGTAGCATTTTTTTCATGGTGTTATTCCCGATGCTTTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAACAAACCCTAAACAATGAGTTGAAATTTCATATTGTTAATATTTATTAATGTATGCCAGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATG  >  NC_000913/578774‑579045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`