Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,776,702	T→C	I106T (ATA→ACA)	yfjY →	CP4‑57 prophage; RadC‑like JAB domain‑containing protein YfjY

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,776,702	0	T	C	100.0%	334.9 / NA	90	I106T (ATA→ACA)	yfjY	CP4‑57 prophage; RadC‑like JAB domain‑containing protein YfjY
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (50/40);  total (50/40)

TTTATGATGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGATACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAA  >  NC_000913/2776566‑2776835                                                                                                                                         |                                                                                                                                      tttATGATGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACt                                                                                                                                    <  1:1132154/140‑1 (MQ=255)           tGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACAGTGGCGCATAac                                                                                                                          <  2:1116544/140‑1 (MQ=255)           tGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAac                                                                                                                          >  2:585539/1‑140 (MQ=255)               tCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAaccacc                                                                                                                      <  1:1083498/140‑1 (MQ=255)               tCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAaccacc                                                                                                                      >  2:264525/1‑140 (MQ=255)                  gAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCt                                                                                                                   <  1:32496/140‑1 (MQ=255)                      cagcagCACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCgg                                                                                                               <  2:825328/140‑1 (MQ=255)                       agcagAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGc                                                                                                              >  1:130404/1‑140 (MQ=255)                         cagAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCa                                                                                                                              <  1:521323/122‑1 (MQ=255)                         cagAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCa                                                                                                                              <  1:43652/122‑1 (MQ=255)                         cagAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCa                                                                                                                              >  2:521323/1‑122 (MQ=255)                         cagAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCa                                                                                                                              >  2:43652/1‑122 (MQ=255)                         cagAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGa                                                                                                            >  1:884336/1‑140 (MQ=255)                         cagAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGa                                                                                                            >  1:917190/1‑140 (MQ=255)                         cagAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGa                                                                                                            >  2:630531/1‑140 (MQ=255)                                      ttGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCccagc                                                                                               >  2:473252/1‑140 (MQ=255)                                      ttGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCccagc                                                                                               >  1:1054697/1‑140 (MQ=255)                                       tGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCccagcc                                                                                              >  2:214590/1‑140 (MQ=255)                                       tGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCccagcc                                                                                              <  1:1108073/140‑1 (MQ=255)                                       tGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCccagcc                                                                                              >  2:934965/1‑140 (MQ=255)                                         cccACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCccagccag                                                                                            <  1:1111113/140‑1 (MQ=255)                                         cccACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCccagccag                                                                                            <  1:934965/140‑1 (MQ=255)                                         cccACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCccagccag                                                                                            >  2:995448/1‑140 (MQ=255)                                          ccgcGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAgg                                                                                           <  2:161032/137‑1 (MQ=255)                                          ccACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAgg                                                                                           >  2:27781/1‑140 (MQ=255)                                            aCGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAgg                                                                                           <  2:835499/138‑1 (MQ=255)                                            aCGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAgg                                                                                           >  1:835499/1‑138 (MQ=255)                                              gAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGTAGa                                                                                       <  1:995448/140‑1 (MQ=255)                                               aaaCCCTGTTTGTCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTcc                                                                                                   <  2:1003985/127‑1 (MQ=255)                                               aaaCCCTGTTTGTCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTcc                                                                                                   >  1:1003985/1‑127 (MQ=255)                                               aaaCCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGAt                                                                                      <  1:264525/140‑1 (MQ=255)                                               aaaCCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGAt                                                                                      <  1:37377/140‑1 (MQ=255)                                                 aCCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATaa                                                                                    <  1:585539/140‑1 (MQ=255)                                                 aCCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATaa                                                                                    <  1:27781/140‑1 (MQ=255)                                                   ccTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGa                                                                                  <  1:519913/140‑1 (MQ=255)                                                   ccTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGa                                                                                  <  2:149676/140‑1 (MQ=255)                                                      gTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACta                                                                               <  2:884336/140‑1 (MQ=255)                                                        ttGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATaa                                                                                    >  1:557223/1‑133 (MQ=255)                                                        ttGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATaa                                                                                    <  2:557223/133‑1 (MQ=255)                                                        ttGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACtata                                                                             >  2:482491/1‑140 (MQ=255)                                                        ttGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTCAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCCGGCAGATAAGACtata                                                                             >  1:272793/1‑140 (MQ=255)                                                            cGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGc                                                                         <  1:630531/140‑1 (MQ=255)                                                             ggTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCa                                                                        >  1:904837/1‑140 (MQ=255)                                                                         aGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCa                                                            >  1:613322/1‑140 (MQ=255)                                                                           tACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAgg                                                          >  1:483158/1‑140 (MQ=255)                                                                           tACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAgg                                                          >  1:121427/1‑140 (MQ=255)                                                                            aCCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGgc                                                         >  2:59201/1‑140 (MQ=255)                                                                            aCCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACCATAACGCAGCGTCTGGTGCAGgc                                                         >  1:953627/1‑140 (MQ=255)                                                                              cGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGgcgc                                                       >  1:676934/1‑140 (MQ=255)                                                                                aGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCtt                                                     >  1:924255/1‑140 (MQ=255)                                                                                aGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCtt                                                     >  2:152586/1‑140 (MQ=255)                                                                                aGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCtt                                                     >  1:1095626/1‑140 (MQ=255)                                                                                aGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCtt                                                     >  1:515146/1‑140 (MQ=255)                                                                                  gTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCa                                                   >  2:969185/1‑140 (MQ=255)                                                                                     cATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCt                                                <  2:121427/140‑1 (MQ=255)                                                                                     cATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCt                                                <  1:214590/140‑1 (MQ=255)                                                                                           cGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGc                                                 <  1:731134/133‑1 (MQ=255)                                                                                           cGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGc                                                 >  2:731134/1‑133 (MQ=255)                                                                                             tGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGata                                        >  1:402962/1‑140 (MQ=255)                                                                                                ggtggtCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATcc                                     <  1:473252/140‑1 (MQ=255)                                                                                                ggtggtCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATcc                                     <  1:22983/140‑1 (MQ=255)                                                                                                 gtggtCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCg                                    <  1:59201/140‑1 (MQ=255)                                                                                                  tggtCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCgt                                   >  1:151198/1‑140 (MQ=255)                                                                                                    gtCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCgtgt                                 <  1:482491/140‑1 (MQ=255)                                                                                                    gtCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCgtgt                                 >  1:92214/1‑140 (MQ=255)                                                                                                    gtCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCgtgt                                 >  1:188110/1‑140 (MQ=255)                                                                                                    gtCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCgtgt                                 >  1:1135388/1‑140 (MQ=255)                                                                                                    gtCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCgtgt                                 <  2:978322/140‑1 (MQ=255)                                                                                                      cAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTcc                               <  2:1054697/140‑1 (MQ=255)                                                                                                          cgcgCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTTCTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGa                           <  2:613322/140‑1 (MQ=255)                                                                                                          cgcgCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGa                           <  2:515146/140‑1 (MQ=255)                                                                                                          cgcgCCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGAATACCCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGa                           >  2:516493/1‑140 (MQ=255)                                                                                                           gcgcCCTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGAc                          <  2:422411/140‑1 (MQ=255)                                                                                                              cccTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCAt                       >  2:684679/1‑140 (MQ=255)                                                                                                              cccTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGNNTCCNTGACCAt                       <  2:402962/140‑1 (MQ=255)                                                                                                              cccTGTAGTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCAt                       <  2:620557/140‑1 (MQ=255)                                                                                                                cTGTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCt                     <  2:566692/140‑1 (MQ=255)                                                                                                                  gTATTTCAATGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGa                   <  2:130404/140‑1 (MQ=255)                                                                                                                          aTGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTtggt           >  2:230982/1‑140 (MQ=255)                                                                                                                           tGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTtggtg          >  1:217307/1‑140 (MQ=255)                                                                                                                           tGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTtggtg          >  2:909607/1‑140 (MQ=255)                                                                                                                           tGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTtggtg          >  2:568083/1‑140 (MQ=255)                                                                                                                           tGCAGCAGCAGTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTtggtg          >  2:1097796/1‑140 (MQ=255)                                                                                                                             cagcagcagTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTggc        >  2:717617/1‑140 (MQ=255)                                                                                                                             cagcagcagTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTggc        >  2:506620/1‑140 (MQ=255)                                                                                                                             cagcagcagTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTggc        >  2:874136/1‑140 (MQ=255)                                                                                                                             cagcagcagTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTggc        >  1:1047765/1‑140 (MQ=255)                                                                                                                               gcagcagTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTggcag      <  2:483158/140‑1 (MQ=255)                                                                                                                                cagcagTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTggcagg     >  1:672424/1‑140 (MQ=255)                                                                                                                                   cagTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCaa  >  2:30552/1‑140 (MQ=255)                                                                                                                                   cagTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCaa  <  2:151198/140‑1 (MQ=255)                                                                                                                                   cagTGACACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCaa  <  1:697947/140‑1 (MQ=255)                                                                                                                                         |                                                                                                                                      TTTATGATGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGATACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAA  >  NC_000913/2776566‑2776835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑