Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	566,769	C→T	pseudogene (86/93 nt)	renD →	DLP12 prophage; protein RenD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	566,769	0	C	T	100.0%	252.3 / NA	72	pseudogene (86/93 nt)	renD	DLP12 prophage; protein RenD
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (36/36);  total (36/36)

GCGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTG  >  NC_000913/566634‑566905                                                                                                                                        |                                                                                                                                         gCGAAGATCGCAGAAATTAAATCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTa                                                                                                                                      >  2:3180/1‑140 (MQ=255)    aaGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATc                                                                                                                                   <  2:463370/140‑1 (MQ=255)           cAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCtt                                                                                                                            >  2:703780/1‑140 (MQ=255)                 ttAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGTAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGAACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAg                                                                                                                      <  2:781704/140‑1 (MQ=255)                 ttAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAg                                                                                                                      <  2:29614/140‑1 (MQ=255)                 ttAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAg                                                                                                                      <  1:703780/140‑1 (MQ=255)                  tAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGc                                                                                                                     <  2:545591/140‑1 (MQ=255)                            ttCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGac                                                                                                           <  1:84090/140‑1 (MQ=255)                                 aCTGAAAGGAGCAAGTGTACGACAGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACAcgcg                                                                                                      >  2:662484/1‑140 (MQ=255)                                      aaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGac                                                                                                           <  2:612834/130‑1 (MQ=255)                                      aaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGac                                                                                                           >  1:612834/1‑130 (MQ=255)                                      aaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa                                                                                                 >  1:774406/1‑140 (MQ=255)                                             aaGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa                                                                                          <  1:605030/140‑1 (MQ=255)                                             aaGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa                                                                                          >  1:495220/1‑140 (MQ=255)                                             aaGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa                                                                                          >  1:957296/1‑140 (MQ=255)                                               gtgtATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa                                                                                        >  2:731977/1‑140 (MQ=255)                                                  tATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc                                                                                     <  2:620404/140‑1 (MQ=255)                                                  tATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc                                                                                     <  1:584800/140‑1 (MQ=255)                                                    tGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACtctc                                                                                   >  2:41433/1‑140 (MQ=255)                                                    tGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACtctc                                                                                   >  2:304899/1‑140 (MQ=255)                                                    tGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACtctc                                                                                   >  2:905094/1‑140 (MQ=255)                                                       cGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt                                                                                <  1:41433/140‑1 (MQ=255)                                                         ggCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca                                                                              >  1:277777/1‑140 (MQ=255)                                                          gCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag                                                                             >  1:542877/1‑140 (MQ=255)                                                          gCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag                                                                             >  2:48696/1‑140 (MQ=255)                                                          gCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag                                                                             >  1:334103/1‑140 (MQ=255)                                                          gCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtaagtcag                                                                             >  2:66641/1‑140 (MQ=255)                                                               gagGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTg                                                                        <  1:662484/140‑1 (MQ=255)                                                                    aaTTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca                                                                   >  1:1069250/1‑140 (MQ=255)                                                                     attattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag                                                                             <  1:523923/129‑1 (MQ=255)                                                                     attattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtcag                                                                             >  2:523923/1‑129 (MQ=255)                                                                     attattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac                                                                  <  1:731977/140‑1 (MQ=255)                                                                     attattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac                                                                  <  1:3180/140‑1 (MQ=255)                                                                     attattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac                                                                  <  1:304899/140‑1 (MQ=255)                                                                     attattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTAAGTCAGAGGTGACTcac                                                                  <  1:66641/140‑1 (MQ=255)                                                                       tattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt                                                                <  1:979036/140‑1 (MQ=255)                                                                           cATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa                                                            >  1:497725/1‑140 (MQ=255)                                                                               aCCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa                                                        <  1:48696/140‑1 (MQ=255)                                                                               aCCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa                                                        <  2:774406/140‑1 (MQ=255)                                                                               aCCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa                                                        <  2:21598/140‑1 (MQ=255)                                                                               aCCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa                                                        <  2:495220/140‑1 (MQ=255)                                                                               aCCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa                                                        <  2:281337/140‑1 (MQ=255)                                                                                   ggggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac                                                                  >  2:1065413/1‑126 (MQ=255)                                                                                   ggggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac                                                                  <  1:1065413/126‑1 (MQ=255)                                                                                   ggggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaa                                                          <  1:798638/134‑1 (MQ=255)                                                                                   ggggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaa                                                          >  2:798638/1‑134 (MQ=255)                                                                                   ggggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGt                                                    >  2:778003/1‑140 (MQ=255)                                                                                     ggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAt                                                  <  2:1069250/140‑1 (MQ=255)                                                                                        cGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATc                                                 <  1:551185/138‑1 (MQ=255)                                                                                        cGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATc                                                 >  2:551185/1‑138 (MQ=255)                                                                                          cATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAcc                                             >  2:307964/1‑140 (MQ=255)                                                                                          cATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAcc                                             >  2:1016617/1‑140 (MQ=255)                                                                                          cATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAcc                                             >  1:684718/1‑140 (MQ=255)                                                                                                   ttCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaaaa                                    >  1:1026836/1‑140 (MQ=255)                                                                                                            caGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa                           <  2:762249/140‑1 (MQ=255)                                                                                                            caGGACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa                           <  2:497725/140‑1 (MQ=255)                                                                                                               gACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAg                        >  2:106425/1‑140 (MQ=255)                                                                                                               gACGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAG‑GAGAAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACGGc                       >  2:982413/1‑140 (MQ=17)                                                                                                                 cGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCa                      <  1:1016617/140‑1 (MQ=255)                                                                                                                 cGTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCa                      <  1:778003/140‑1 (MQ=255)                                                                                                                  gTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaa                                       <  1:80139/122‑1 (MQ=255)                                                                                                                  gTTGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaa                                       >  2:80139/1‑122 (MQ=255)                                                                                                                    tGCCGCGGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTc                   >  2:399066/1‑140 (MQ=255)                                                                                                                       cgcgGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGcc                >  1:980816/1‑140 (MQ=255)                                                                                                                        gcgGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCt               <  2:957296/140‑1 (MQ=255)                                                                                                                         cgGTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTg              >  2:963755/1‑140 (MQ=255)                                                                                                                           gTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa                           >  2:180178/1‑125 (MQ=255)                                                                                                                           gTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa                           <  1:180178/125‑1 (MQ=255)                                                                                                                           gTAACAGGCGCAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGaa            >  2:219608/1‑140 (MQ=255)                                                                                                                                    gcAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGt   >  1:1137041/1‑140 (MQ=14)                                                                                                                                     cAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTg  <  2:1040624/140‑1 (MQ=14)                                                                                                                                     cAATCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTg  <  1:219608/140‑1 (MQ=14)                                                                                                                                        |                                                                                                                                         GCGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTG  >  NC_000913/566634‑566905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑