Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,773,416	(T)8→7	coding (99/1704 nt)	yfjW →	CP4‑57 prophage; uncharacterized protein YfjW

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,773,409	0	T	.	100.0%	357.2 / NA	83	coding (92/1704 nt)	yfjW	CP4‑57 prophage; uncharacterized protein YfjW
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (39/44);  total (39/44)

TATGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTATTTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATGGTACCT  >  NC_000913/2773274‑2773544                                                                                                                                        |                                                                                                                                        tATGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTAttttt                                                                                                                                     >  2:686925/1‑140 (MQ=255)   tGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTAttttttt                                                                                                                                   <  2:877558/140‑1 (MQ=255)   tGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTAttttttt                                                                                                                                   <  2:1094131/140‑1 (MQ=255)   tGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTAttttttt                                                                                                                                   >  1:1094131/1‑140 (MQ=255)      ttAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTAtttttttctt                                                                                                                                <  1:1123923/140‑4 (MQ=255)        aaaaaTCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTtcttct                                                                                                                             <  1:632166/140‑1 (MQ=255)             tCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTa                                                                                                                        <  2:1108417/140‑1 (MQ=255)              cAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTAttttttt                                                                                                                                   >  1:1004463/1‑129 (MQ=255)              cAACCTTAAAGGCTTTATACACGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTAttttttt                                                                                                                                   <  2:1004463/129‑1 (MQ=255)                aCCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTg                                                                                                                     >  2:1128540/1‑140 (MQ=255)                aCCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTg                                                                                                                     >  1:811612/1‑140 (MQ=255)                           tttATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCttt                                                                                                          >  2:278883/1‑140 (MQ=255)                           tttATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCttt                                                                                                          >  2:182979/1‑140 (MQ=255)                            ttATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTctct                                                                                                            <  1:111402/137‑1 (MQ=255)                            ttATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTctct                                                                                                            >  2:111402/1‑137 (MQ=255)                            ttATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTc                                                                                                         >  1:14961/1‑140 (MQ=255)                            ttATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTc                                                                                                         >  2:647750/1‑140 (MQ=255)                              ataCATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCaa                                                                                                       <  1:10022/140‑1 (MQ=255)                                  aTGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATAtt                                                                                                   <  1:648468/140‑1 (MQ=255)                                       tttGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTAcc                                                                                              >  2:165235/1‑140 (MQ=255)                                       tttGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTAcc                                                                                              >  1:215868/1‑140 (MQ=255)                                        ttGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCg                                                                                             <  1:9925/140‑1 (MQ=255)                                         tGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGc                                                                                            >  2:473688/1‑140 (MQ=255)                                         tGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGc                                                                                            >  2:773666/1‑140 (MQ=255)                                           cTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTg                                                                                          >  1:901407/1‑140 (MQ=255)                                              tGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCt                                                                                       <  1:342488/140‑1 (MQ=255)                                                gCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTc                                                                                     >  2:654320/1‑140 (MQ=255)                                                gCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTc                                                                                     >  1:558321/1‑140 (MQ=255)                                                gCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTc                                                                                     >  1:1001288/1‑140 (MQ=255)                                                gCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTc                                                                                     >  1:1119760/1‑140 (MQ=255)                                                gCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTc                                                                                     >  1:739585/1‑140 (MQ=255)                                                gCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTc                                                                                     >  2:268208/1‑140 (MQ=255)                                                gCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTc                                                                                     >  1:691610/1‑140 (MQ=255)                                                   tttGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTcaca                                                                                  <  1:248483/140‑1 (MQ=255)                                                   tttGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTcaca                                                                                  <  2:365419/140‑1 (MQ=255)                                                   tttGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTcaca                                                                                  >  2:63961/1‑140 (MQ=255)                                                    ttGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACaa                                                                                 <  1:890451/140‑1 (MQ=255)                                                        aTCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAgg                                                                             <  2:315410/140‑1 (MQ=255)                                                          cAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTa                                                                           <  2:1001288/140‑1 (MQ=255)                                                          cAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTa                                                                           <  1:165235/140‑1 (MQ=255)                                                          cAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTa                                                                           <  1:278883/140‑1 (MQ=255)                                                           aGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTaa                                                                          <  1:773666/140‑1 (MQ=255)                                                           aGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTaa                                                                          <  1:268208/140‑1 (MQ=255)                                                           aGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTaa                                                                          <  1:686925/140‑1 (MQ=255)                                                           aGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTaa                                                                          <  2:863003/140‑1 (MQ=255)                                                           aGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTaa                                                                          <  1:647750/140‑1 (MQ=255)                                                           aGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTaa                                                                          <  2:901407/140‑1 (MQ=255)                                                           aGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTaa                                                                          <  2:811612/140‑1 (MQ=255)                                                            gAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAAt                                                                         >  1:641905/1‑140 (MQ=255)                                                             aaaGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAAtt                                                                        >  1:773084/1‑140 (MQ=255)                                                                 agaAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTa                                                                    >  2:3677/1‑140 (MQ=255)                                                                 agaAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTa                                                                    >  2:606211/1‑140 (MQ=255)                                                                  gaAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTAt                                                                   <  2:870193/140‑1 (MQ=255)                                                                           agaaagaTATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCa                                                          >  1:190951/1‑140 (MQ=255)                                                                           agaaagaTATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCa                                                          >  1:308340/1‑140 (MQ=255)                                                                             aaagaTATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAAt                                                        >  1:292980/1‑140 (MQ=255)                                                                                 atatTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGaaa                                                    <  2:691610/140‑1 (MQ=255)                                                                                   atTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACt                                                  >  2:964417/1‑140 (MQ=255)                                                                                      tAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGa                                               <  2:739585/140‑1 (MQ=255)                                                                                       aGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGAt                                              >  1:635404/1‑140 (MQ=255)                                                                                        gCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGAtt                                             >  1:761097/1‑140 (MQ=255)                                                                                           aaaaaaTTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACa                                          >  1:341504/1‑140 (MQ=255)                                                                                                     cTTTACGATCTTGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAatt                                <  2:201887/140‑1 (MQ=255)                                                                                                               ttGGCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCa                      >  1:848718/1‑140 (MQ=255)                                                                                                                  gCATTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTg                   >  1:316027/1‑140 (MQ=255)                                                                                                                    aTTTTTCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGa                 <  2:641905/140‑1 (MQ=255)                                                                                                                      ttttCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGaaa               <  1:209206/140‑1 (MQ=255)                                                                                                                       tttCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAAc              <  2:316027/140‑1 (MQ=255)                                                                                                                       tttCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAAc              <  2:341504/140‑1 (MQ=255)                                                                                                                        ttCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAAcc             >  1:14460/1‑140 (MQ=255)                                                                                                                         tCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCg            <  1:3677/140‑1 (MQ=255)                                                                                                                         tCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCg            >  2:200651/1‑140 (MQ=255)                                                                                                                         tCTATATTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCA‑‑ATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCa          <  2:14961/140‑1 (MQ=255)                                                                                                                           tataTTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCa          <  1:182979/140‑1 (MQ=255)                                                                                                                           tataTTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCa          <  2:215868/140‑1 (MQ=255)                                                                                                                           tataTTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCa          <  2:848718/140‑1 (MQ=255)                                                                                                                              atTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATgg       <  1:964417/140‑1 (MQ=255)                                                                                                                              atTTCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATgg       <  2:761097/140‑1 (MQ=255)                                                                                                                               tttCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATGGt      <  1:200651/140‑1 (MQ=255)                                                                                                                                 tCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATGGTAc    <  1:654320/140‑1 (MQ=255)                                                                                                                                 tCCTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATGGTAc    <  1:606211/140‑1 (MQ=255)                                                                                                                                  ccTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACt                    >  1:131060/1‑123 (MQ=255)                                                                                                                                  ccTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACt                    <  2:131060/123‑1 (MQ=255)                                                                                                                                  ccTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGa                 >  1:939634/1‑126 (MQ=255)                                                                                                                                  ccTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGa                 <  2:939634/126‑1 (MQ=255)                                                                                                                                  ccTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATgg       >  1:301015/1‑136 (MQ=255)                                                                                                                                  ccTCTA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATgg       <  2:301015/136‑1 (MQ=255)                                                                                                                                  ccTCTA‑TTTTTTTCTTCTTTGTAGTGGCATTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATgg       <  2:1007725/136‑1 (MQ=255)                                                                                                                                  ccTCTA‑TTTTTTTCTTCTTTGTAGTGGCATTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATgg       >  1:1007725/1‑136 (MQ=255)                                                                                                                                   ctctA‑TTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATGGTACCt  <  2:1080919/140‑1 (MQ=255)                                                                                                                                        |                                                                                                                                        TATGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTAAGAAAGATATTTAGCAAAAAAATTGACTTTACGATCTTGGCATTTTTCTATATTTCCTCTATTTTTTTTCTTCTTTGTAGTGGCGTTCTCTTTCAATATTTTACCGCTGCCTTCACAAAAGGTAATTGTTATGAATGCTCAATGAAACTTGATTACATAAAACAATTTTATTTTTCACTGGAAACCGCATGGTACCT  >  NC_000913/2773274‑2773544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑