BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,884,500	G→A	intergenic (‑362/+53)	casA ← / ← cas3	type I‑E CRISPR system Cascade subunit CasA/CRISPR‑associated endonuclease/helicase Cas3

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,884,500	0	G	A	100.0%	378.9 / NA	105	intergenic (‑362/+53)	casA/cas3	type I‑E CRISPR system Cascade subunit CasA/CRISPR‑associated endonuclease/helicase Cas3
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (46/59); total (46/59)

Only 100 of 106 total aligned reads displayed.

TTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCA  >  NC_000913/2884368‑2884636

ttattaAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAAc                                                                                                                                   <  2:981746/140‑1 (MQ=255)

     aaaGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTa                                                                                                                              <  2:850774/140‑1 (MQ=255)

      aaGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTAt                                                                                                                             <  2:850442/140‑1 (MQ=255)

       aGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTAtt                                                                                                                            <  2:145243/140‑1 (MQ=255)

          aaCTTTTAGTTATAATAATTACCGTGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGt                                                                                                                         <  1:797635/140‑1 (MQ=255)

          aaCTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGt                                                                                                                         <  2:307860/140‑1 (MQ=255)

             ttttAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCtt                                                                                                                      <  1:136738/140‑1 (MQ=255)

                    tataATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCg                                                                                                               <  1:834752/140‑1 (MQ=255)

                              aCCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGAt                                                                                                       >  2:290518/1‑138 (MQ=255)

                              aCCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGAt                                                                                                       <  1:290518/138‑1 (MQ=255)

                              aCCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATaa                                                                                                     >  1:517022/1‑140 (MQ=255)

                              aCCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATaa                                                                                                     >  1:680328/1‑140 (MQ=255)

                                 aTGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACaa                                                                                                  >  1:760442/1‑140 (MQ=255)

                                 aTGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACaa                                                                                                  >  1:831341/1‑140 (MQ=255)

                                 aTGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACaa                                                                                                  >  1:91098/1‑140 (MQ=255)

                                   gAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATc                                                                                                >  2:625372/1‑140 (MQ=255)

                                    aaTTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCa                                                                                               >  2:681884/1‑140 (MQ=255)

                                         tattaCATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCa                                                                                                            <  2:710818/122‑1 (MQ=255)

                                         tattaCATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCa                                                                                                            >  1:710818/1‑122 (MQ=255)

                                         tattaCATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATATCAATCATTccc                                                                                          <  1:84051/140‑1 (MQ=255)

                                          attaCATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCg                                                                                         >  2:192340/1‑140 (MQ=255)

                                                        tCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGAt                                                                           >  1:990694/1‑140 (MQ=255)

                                                         cATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGAtt                                                                          >  1:330002/1‑140 (MQ=255)

                                                            aCTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGc                                                                       >  2:435906/1‑140 (MQ=255)

                                                            aCTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGc                                                                       <  2:680328/140‑1 (MQ=255)

                                                              tgtgAATATAAATTCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCTCGAAGTTATTTGGGATTTGCAg                                                                     >  2:842560/1‑140 (MQ=255)

                                                               gtgAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAgg                                                                    >  1:1032045/1‑140 (MQ=255)

                                                               gtgAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAgg                                                                    >  1:165572/1‑140 (MQ=255)

                                                                tgAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGc                                                                       >  2:750601/1‑136 (MQ=255)

                                                                tgAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGc                                                                       <  1:750601/136‑1 (MQ=255)

                                                                tgAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAggg                                                                   >  1:383126/1‑140 (MQ=255)

                                                                tgAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAggg                                                                   >  1:459249/1‑140 (MQ=255)

                                                                 gAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGa                                                                  <  1:192340/140‑1 (MQ=255)

                                                                 gAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGa                                                                  <  1:825370/140‑1 (MQ=255)

                                                                  aaTATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGAt                                                                 >  1:714167/1‑140 (MQ=255)

                                                                  aaTATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGAt                                                                 <  2:760442/140‑1 (MQ=255)

                                                                  aaTATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGAt                                                                 >  2:414689/1‑140 (MQ=255)

                                                                      taAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGAct                                                             <  2:383126/140‑1 (MQ=255)

                                                                        aaaTCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCa                                                                      >  1:136213/1‑129 (MQ=255)

                                                                        aaaTCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCa                                                                      <  2:136213/129‑1 (MQ=255)

                                                                          aTCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTgg                                                         >  2:46329/1‑140 (MQ=255)

                                                                          aTCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTgg                                                         >  1:663744/1‑140 (MQ=255)

                                                                           tctcATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGt                                                        <  1:1103077/140‑1 (MQ=255)

                                                                           tctcATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGt                                                        <  2:398802/140‑1 (MQ=255)

                                                                            ctcATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTc                                                       >  2:527864/1‑140 (MQ=255)

                                                                            ctcATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTc                                                       <  1:999605/140‑1 (MQ=255)

                                                                               aTACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGa                                                                  >  1:119698/1‑126 (MQ=255)

                                                                               aTACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGa                                                                  <  2:119698/126‑1 (MQ=255)

                                                                                tACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATcc                                                   >  2:985316/1‑140 (MQ=255)

                                                                                 aCCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATccc                                                  <  2:517022/140‑1 (MQ=255)

                                                                                    gggAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTc                                               <  1:871752/140‑1 (MQ=255)

                                                                                    gggAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTc                                               <  1:312640/140‑1 (MQ=255)

                                                                                    gggAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTc                                               <  2:1032045/140‑1 (MQ=255)

                                                                                    gggAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTc                                               <  1:414689/140‑1 (MQ=255)

                                                                                    gggAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTc                                               <  2:663744/140‑1 (MQ=255)

                                                                                    gggAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTc                                               <  1:435906/140‑1 (MQ=255)

                                                                                     ggAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTc                                               >  1:821090/1‑139 (MQ=255)

                                                                                     ggAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTc                                               <  2:821090/139‑1 (MQ=255)

                                                                                     ggAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCa                                              >  2:429045/1‑140 (MQ=255)

                                                                                     ggAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCa                                              >  1:858074/1‑140 (MQ=255)

                                                                                      gAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCAt                                             <  2:91098/140‑1 (MQ=255)

                                                                                       aaaTTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATc                                            <  1:429045/140‑1 (MQ=255)

                                                                                        aaTTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATcc                                           <  1:625372/140‑1 (MQ=255)

                                                                                        aaTTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATcc                                           <  2:714167/140‑1 (MQ=255)

                                                                                         aTTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATccc                                          <  2:943663/140‑1 (MQ=255)

                                                                                         aTTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATccc                                          <  1:46329/140‑1 (MQ=255)

                                                                                         aTTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATccc                                          <  1:681884/140‑1 (MQ=255)

                                                                                         aTTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATccc                                          >  2:1083489/1‑140 (MQ=255)

                                                                                         aTTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATccc                                          <  2:1029177/140‑1 (MQ=255)

                                                                                          ttAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATcccc                                         <  2:330002/140‑1 (MQ=255)

                                                                                           tAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCt                                        <  2:990694/140‑1 (MQ=255)

                                                                                              aagaagATGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGta                                     <  1:409904/140‑1 (MQ=255)

                                                                                                   gaTGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGt                                <  1:919546/140‑1 (MQ=255)

                                                                                                    aTGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGTGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGta                                     <  1:665934/134‑1 (MQ=255)

                                                                                                    aTGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGTGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGta                                     >  2:665934/1‑134 (MQ=255)

                                                                                                    aTGTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGta                               >  2:272890/1‑140 (MQ=255)

                                                                                                      gTACATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGtaat                             <  2:858074/140‑1 (MQ=255)

                                                                                                         cATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGt                                      <  2:1065055/128‑1 (MQ=255)

                                                                                                         cATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGt                                      >  1:1065055/1‑128 (MQ=255)

                                                                                                         cATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAAc                          <  2:416673/140‑1 (MQ=255)

                                                                                                         cATTGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAAc                          <  2:165572/140‑1 (MQ=255)

                                                                                                           ttGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACaa                        <  1:1083489/140‑1 (MQ=255)

                                                                                                           ttGTGCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACaa                        <  2:937256/140‑1 (MQ=255)

                                                                                                             gtgCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGtaat                             >  1:1091894/1‑133 (MQ=255)

                                                                                                             gtgCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGtaat                             <  2:1091894/133‑1 (MQ=255)

                                                                                                              tgCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGt                                <  1:728528/129‑1 (MQ=255)

                                                                                                              tgCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGt                                >  2:728528/1‑129 (MQ=255)

                                                                                                              tgCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATAc                     >  2:651147/1‑140 (MQ=255)

                                                                                                               gCACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACt                    >  1:593580/1‑140 (MQ=255)

                                                                                                                cACCTTCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTg                   >  2:95084/1‑140 (MQ=255)

                                                                                                                    ttCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTAc               <  2:831341/140‑1 (MQ=255)

                                                                                                                    ttCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTAc               <  1:985316/140‑1 (MQ=255)

                                                                                                                    ttCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTAc               <  2:593580/140‑1 (MQ=255)

                                                                                                                     tCCCTACTTAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGAGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTAcc              >  2:94277/1‑140 (MQ=255)

                                                                                                                             tAAGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGa      <  1:527864/140‑1 (MQ=255)

                                                                                                                              aaGTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGAc     >  1:287970/1‑140 (MQ=255)

                                                                                                                                gTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCa        >  1:967548/1‑135 (MQ=255)

                                                                                                                                gTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCa        <  2:967548/135‑1 (MQ=255)

                                                                                                                                gTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGAccc   >  2:676322/1‑140 (MQ=255)

                                                                                                                                gTAGAGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGT‑ATAACAATACTGTTACCCTGCCAGACcca  >  2:774071/1‑140 (MQ=255)

TTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCAGGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCCTGCCAGACCCA  >  NC_000913/2884368‑2884636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`