mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 496 | (A)6→7 | coding (160/2463 nt) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 1,152 | (C)5→6 | coding (816/2463 nt) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 1,875 | A→G | V513V (GTA→GTG) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 51,317 | C→T | G97D (GGT→GAT) | apaG ← | DUF525 domain‑containing protein ApaG |
| RA | 66,090 | (T)5→4 | coding (461/696 nt) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 68,258 | A→G | V27A (GTC→GCC) | araA ← | L‑arabinose isomerase |
| RA | 69,884 | A→C | R55R (CGT→CGG) | araB ← | ribulokinase |
| RA | 99,166 | A→G | E255G (GAA→GGA) | ftsW → | putative lipid II flippase FtsW |
| RA | 147,694 | A→G | T243A (ACG→GCG) | rpnC → | recombination‑promoting nuclease RpnC |
| RA | 169,469 | T→C | G662G (GGT→GGC) | fhuA → | ferrichrome outer membrane transporter/phage receptor |
| RA | 184,575 | A→G | G165G (GGT→GGC) | yaeI ← | phosphodiesterase YaeI |
| RA | 211,646 | A→G | V656V (GTA→GTG) | ldcC → | lysine decarboxylase 2 |
| RA | 234,139 | (A)7→8 | coding (644/756 nt) | gloB ← | hydroxyacylglutathione hydrolase GloB |
| RA | 256,057 | A→G | E27E (GAA→GAG) | gpt → | xanthine‑guanine phsophoribosyltransferase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| MC JC | 260,012 | (TTA)2→1 | coding (87‑89/1056 nt) | phoE ← | outer membrane porin PhoE |
| RA | 262,141 | G→A | S213S (TCG→TCA) | proA → | glutamate‑5‑semialdehyde dehydrogenase |
| RA | 406,413 | A→G | Q3Q (CAA→CAG) | aroL → | shikimate kinase 2 |
| RA | 424,176 | A→G | V553V (GTA→GTG) | malZ → | maltodextrin glucosidase |
| RA | 424,314 | T→C | A599A (GCT→GCC) | malZ → | maltodextrin glucosidase |
| RA | 465,926 | A→G | L463L (TTA→CTA) | ybaE ← | putative protein YbaE |
| RA | 497,702 | A→G | A176A (GCA→GCG) | adk → | adenylate kinase |
| RA | 514,464 | A→G | G132G (GGT→GGC) | ybbJ ← | NfeD‑like family protein |
| RA | 519,496 | A→G | R90R (CGT→CGC) | tesA ← | multifunctional acyl‑CoA thioesterase I and protease I and lysophospholipase L1 |
| RA | 527,577 | T→C | intergenic (+36/‑4) | rhsD → / → ybbC | protein RhsD/PF15631 family protein YbbC |
| RA | 531,377 | A→G | V282A (GTA→GCA) | allS ← | DNA‑binding transcriptional activator AllS |
| RA | 548,466 | A→G | N37S (AAC→AGC) | ylbE → | DUF1116 domain‑containing protein YlbE |
| RA | 661,741 | A→G | S180P (TCA→CCA) | lipB ← | lipoyl(octanoyl) transferase |
| RA | 682,156 | Δ1 bp | coding (1238/1671 nt) | hscC ← | chaperone protein HscC |
| RA | 684,717 | A→G | V180A (GTG→GCG) | gltL ← | glutamate/aspartate ABC transporter ATP binding subunit |
| RA | 699,393 | (G)5→6 | intergenic (‑216/+181) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 724,939 | A→G | L14P (CTG→CCG) | kdpC ← | K(+) transporting P‑type ATPase subunit KdpC |
| RA | 744,943 | T→C | V234A (GTG→GCG) | pxpC → | 5‑oxoprolinase component C |
| RA | 745,130 | A→G | Q296Q (CAA→CAG) | pxpC → | 5‑oxoprolinase component C |
| RA | 800,192 | T→C | E128E (GAA→GAG) | ybhD ← | putative DNA‑binding transcriptional regulator YbhD |
| RA | 804,652 | A→G | T384A (ACC→GCC) | ybhJ → | putative hydratase YbhJ |
| RA | 817,768 | A→G | Y242C (TAC→TGC) | moaA → | GTP 3',8'‑cyclase |
| RA | 846,166 | A→G | F100L (TTT→CTT) | glnQ ← | L‑glutamine ABC transporter ATP binding subunit |
| RA | 880,928 | A→G | T68A (ACT→GCT) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase DacC |
| RA | 885,658 | A→G | I158I (ATT→ATC) | ybjI ← | 5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 964,293 | A→G | intergenic (+181/‑27) | ihfB → / → ycaI | integration host factor subunit beta/conserved inner membrane protein YcaI |
| RA | 1,010,898 | C→T | A312V (GCC→GTC) | uup → | ATP‑binding protein with possible role in replication |
| RA | 1,035,913 | A→G | G48G (GGA→GGG) | hyaD → | putative hydrogenase 1 maturation protease HyaD |
| RA | 1,069,275 | A→G | F189L (TTT→CTT) | rutG ← | pyrimidine:H(+) symporter |
| RA | 1,080,039 | (G)5→6 | coding (735/1509 nt) | putP → | proline:Na(+) symporter |
| RA | 1,087,870 | A→G | F663S (TTT→TCT) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine N‑deacetylase and beta‑1,6 glycoside hydrolase |
| RA | 1,093,358 | (G)6→7 | coding (483/1359 nt) | dgcT → | putative diguanylate cyclase DgcT |
| RA | 1,125,779 | G→C | G73A (GGT→GCT) | rimJ → | ribosomal‑protein‑S5‑alanine N‑acetyltransferase |
| RA | 1,143,140 | T→C | T410A (ACT→GCT) | rne ← | ribonuclease E |
| RA | 1,172,289 | (T)5→4 | coding (1676/3447 nt) | mfd ← | transcription‑repair coupling factor |
| RA | 1,176,499 | T→C | V358A (GTG→GCG) | lolC → | lipoprotein release complex ‑ inner membrane subunit |
| RA | 1,177,312 | (G)5→4 | coding (694/702 nt) | lolD → | lipoprotein release complex ‑ ATP binding subunit |
| RA | 1,220,971 | G→A | pseudogene (1371/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,230,039 | A→G | V119A (GTA→GCA) | hlyE ← | hemolysin E |
| RA | 1,285,716 | T→C | V193A (GTC→GCC) | narJ → | nitrate reductase 1 molybdenum cofactor assembly chaperone |
| RA | 1,297,536 | G→A | P196S (CCG→TCG) | adhE ← | aldehyde‑alcohol dehydrogenase |
| RA | 1,370,957 | (A)6→5 | coding (742/1680 nt) | ycjM → | glucosylglycerate phosphorylase |
| RA | 1,390,048 | A→G | V184A (GTA→GCA) | mpaA ← | murein tripeptide amidase A |
| RA | 1,433,698 | T→C | intergenic (‑24/+293) | pinR ← / ← ynaE | Rac prophage; putative site‑specific recombinase/Rac prophage; uncharacterized protein YnaE |
| RA | 1,437,231 | (T)9→8 | intergenic (+2/+29) | micC → / ← ydbK | small regulatory RNA MicC/putative pyruvate‑flavodoxin oxidoreductase |
| RA | 1,480,639 | (A)6→7 | coding (1502/1758 nt) | ynbC → | hydrolase/methyltransferase domain‑containing protein YnbC |
| RA | 1,493,440 | T→C | V324A (GTG→GCG) | trg → | methyl‑accepting chemotaxis protein Trg |
| RA | 1,494,533 | A→G | V180A (GTT→GCT) | ydcI ← | putative DNA‑binding transcriptional repressor YdcI |
| RA | 1,512,747 | T→C | V365A (GTT→GCT) | ydcS → | putative ABC transporter periplasmic binding protein/polyhydroxybutyrate synthase |
| RA | 1,541,351 | C→T | E414K (GAA→AAA) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,570,471 | T→C | T7A (ACA→GCA) | gadC ← | L‑glutamate:4‑aminobutyrate antiporter |
| RA | 1,585,724 | T→C | T255A (ACC→GCC) | ydeP ← | putative oxidoreductase YdeP |
| JC | 1,594,132 | (C)8→11 | pseudogene (3955/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| RA | 1,628,174 | T→C | S220P (TCA→CCA) | ydfG → | 3‑hydroxy acid dehydrogenase |
| RA | 1,634,642 | C→T | G82S (GGC→AGC) | tfaQ ← | Qin prophage; putative tail fiber assembly protein TfaQ |
| RA | 1,661,816 | T→C | F421L (TTC→CTC) | ynfF → | putative selenate reductase YnfF |
| RA | 1,666,880 | T→C | T114A (ACT→GCT) | ynfK ← | putative dethiobiotin synthetase |
| RA | 1,685,542 | (C)6→5 | coding (1047/1404 nt) | fumC ← | fumarase C |
| RA | 1,685,614 | C→T | V325V (GTG→GTA) | fumC ← | fumarase C |
| RA | 1,692,622 | A→G | V77A (GTT→GCT) | uidC ← | outer membrane porin family protein |
| RA | 1,702,242 | A→G | T4A (ACC→GCC) | add → | adenosine deaminase |
| RA | 1,734,952 | T→C | V173A (GTT→GCT) | mepH → | peptidoglycan DD‑endopeptidase MepH |
| RA | 1,784,778 | T→G | T779P (ACC→CCC) | ppsA ← | phosphoenolpyruvate synthetase |
| RA | 1,810,689 | T→C | V160A (GTA→GCA) | ydjM → | putative inner membrane protein regulated by LexA |
| RA | 1,853,608 | (C)5→4 | coding (372/1359 nt) | ydjE ← | putative transporter YdjE |
| RA | 1,862,532 | Δ1 bp | intergenic (‑103/‑239) | msrB ← / → gapA | methionine sulfoxide reductase B/glyceraldehyde‑3‑phosphate dehydrogenase A |
| RA | 1,873,384 | A→G | K448K (AAA→AAG) | dgcJ → | putative diguanylate cyclase DgcJ |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,897,109 | C→T | H60Y (CAC→TAC) | sdaA → | L‑serine deaminase I |
| RA | 1,904,787 | (T)7→8 | intergenic (+41/‑14) | manZ → / → yobD | mannose‑specific PTS enzyme IID component/conserved inner membrane protein YobD |
| RA | 1,913,058 | T→C | N587D (AAC→GAC) | prc ← | tail‑specific protease |
| RA | 1,914,439 | A→G | R126R (CGT→CGC) | prc ← | tail‑specific protease |
| RA | 1,974,541 | T→C | T262A (ACC→GCC) | cheA ← | chemotaxis protein CheA |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 1,981,526 | (C)5→4 | coding (87/1425 nt) | otsA ← | trehalose‑6‑phosphate synthase |
| RA | 1,996,183 | T→C | N217S (AAC→AGC) | sdiA ← | DNA‑binding transcriptional dual regulator SdiA |
| RA | 2,048,262 | C→T | H1109Y (CAT→TAT) | yeeJ → | inverse autotransporter adhesin |
| RA | 2,083,073 | T→C | R106R (CGT→CGC) | sbcB → | exodeoxyribonuclease I |
| RA | 2,095,988 | T→C | F49L (TTC→CTC) | hisF → | imidazole glycerol phosphate synthase subunit HisF |
| RA | 2,141,905 | A→G | V104A (GTG→GCG) | dcd ← | dCTP deaminase |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,196,870 | T→C | L133L (TTA→CTA) | yehF → | putative protein YehF |
| RA | 2,245,248 | T→C | T508A (ACG→GCG) | cirA ← | ferric dihyroxybenzoylserine outer membrane transporter |
| RA | 2,253,852 | A→G | G98G (GGT→GGC) | nupX ← | putative nucleoside transporter |
| RA | 2,322,934 | T→C | S357P (TCA→CCA) | atoC → | DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC |
| RA | 2,326,966 | (C)6→7 | coding (858/1185 nt) | atoB → | acetyl‑CoA acetyltransferase |
| RA | 2,329,419 | G→A | Q127* (CAA→TAA) | yfaQ ← | tandem DUF2300 domain‑containing protein YfaQ |
| RA | 2,366,679 | T→C | V257A (GTC→GCC) | arnB → | UDP‑4‑amino‑4‑deoxy‑L‑arabinose aminotransferase |
| RA | 2,375,918 | (C)5→6 | coding (45/963 nt) | menC ← | o‑succinylbenzoate synthase |
| RA | 2,416,523 | A→G | T593A (ACC→GCC) | pta → | phosphate acetyltransferase |
| RA | 2,417,748 | T→C | V223A (GTT→GCT) | yfcC → | putative transporter YfcC |
| RA | 2,419,382 | (C)6→7 | coding (407/555 nt) | yfcE ← | phosphodiesterase YfcE |
| RA | 2,436,339 | G→A | P104L (CCC→CTC) | usg ← | putative semialdehyde dehydrogenase Usg |
| RA | 2,446,579 | T→C | T299A (ACC→GCC) | aroC ← | chorismate synthase |
| RA | 2,450,815 | A→G | G87G (GGT→GGC) | yfcQ ← | putative fimbrial protein YfcQ |
| RA | 2,457,102 | A→G | G686G (GGT→GGC) | fadJ ← | 3‑hydroxyacyl‑CoA dehydrogenase FadJ |
| RA | 2,462,889 | (C)9→10 | intergenic (+243/‑123) | fadL → / → yfdF | long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF |
| RA | 2,481,025 | T→C | L384L (TTA→TTG) | emrY ← | tripartite efflux pump membrane subunit EmrY |
| RA | 2,527,823 | T→C | V293A (GTG→GCG) | yfeH → | putative solute:Na(+) symporter |
| RA | 2,545,766 | A→G | intergenic (‑157/‑7) | murR ← / → murQ | DNA‑binding transcriptional dual regulator MurR/N‑acetylmuramic acid 6‑phosphate etherase |
| RA | 2,554,937 | A→G | G82G (GGT→GGC) | eutR ← | putative AraC‑type transcriptional regulator EutR |
| RA | 2,572,997 | A→G | V170A (GTG→GCG) | eutD ← | phosphate acetyltransferase EutD |
| RA | 2,579,480 | Δ1 bp | coding (815/951 nt) | talA → | transaldolase A |
| RA | 2,592,874 | A→G | N38S (AAC→AGC) | ypfN → | UPF0370 protein YpfN |
| RA | 2,603,550 | Δ1 bp | coding (1733/2019 nt) | hyfB → | hydrogenase 4 component B |
| RA | 2,604,643 | T→C | V266A (GTT→GCT) | hyfC → | hydrogenase 4 component C |
| RA | 2,669,247 | T→C | R72R (CGT→CGC) | hcaE → | putative 3‑phenylpropionate/cinnamate dioxygenase subunit alpha |
| RA | 2,682,157 | (C)7→8 | coding (589/3282 nt) | yphG ← | DUF5107 domain‑containing protein YphG |
| RA | 2,710,619 | T→C | V67A (GTG→GCG) | nadB → | L‑aspartate oxidase |
| RA | 2,713,744 | A→G | V283V (GTA→GTG) | srmB → | ATP‑dependent RNA helicase SrmB |
| RA | 2,751,998 | T→C | F68F (TTT→TTC) | recN → | DNA repair protein RecN |
| RA | 2,755,958 | Δ1 bp | intergenic (+3/‑201) | ssrA → / → intA | tmRNA/CP4‑57 prophage; integrase |
| RA | 2,771,767 | T→C | intergenic (+152/+73) | yfjT → / ← yfjU | CP4‑57 prophage; uncharacterized protein YfjT/CP4‑57 prophage; ArsC family protein YfjU |
| RA | 2,779,615 | T→C | S1038G (AGT→GGT) | ypjA ← | adhesin‑like autotransporter YpjA |
| RA | 2,795,309 | T→C | Y353H (TAT→CAT) | gabP → | 4‑aminobutyrate:H(+) symporter |
| RA | 2,800,962 | T→C | S80S (AGT→AGC) | nrdH → | glutaredoxin‑like protein |
| RA | 2,811,134 | A→G | H122R (CAC→CGC) | mprA → | DNA‑binding transcriptional repressor MprA |
| RA | 2,826,581 | Δ1 bp | coding (190/960 nt) | srlE → | sorbitol‑specific PTS enzyme IIBC1 component |
| RA | 2,838,210 | (A)5→4 | intergenic (‑105/+44) | hydN ← / ← ascG | putative electron transport protein HydN/DNA‑binding transcriptional repressor AscG |
| RA | 2,854,583 | T→C | G82G (GGT→GGC) | fhlA → | DNA‑binding transcriptional activator FhlA |
| MC JC | 2,857,096 | Δ2,538 bp | coding (4‑2541/2562 nt) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,870,459 | T→C | E282E (GAA→GAG) | truD ← | tRNA pseudouridine(13) synthase |
| RA | 2,878,931 | Δ1 bp | coding (842/918 nt) | cas1 ← | multifunctional nuclease Cas1 |
| RA | 2,884,093 | (C)6→7 | coding (46/1509 nt) | casA ← | type I‑E CRISPR system Cascade subunit CasA |
| RA | 2,909,780 | C→A | intergenic (‑114/+114) | pyrG ← / ← mazG | CTP synthetase/nucleoside triphosphate pyrophosphohydrolase |
| RA | 2,919,542 | T→C | D402G (GAC→GGC) | gudX ← | glucarate dehydratase‑related protein |
| RA | 2,949,993 | (T)5→6 | coding (752/1332 nt) | argA → | N‑acetylglutamate synthase |
| RA | 2,999,680 | (G)7→8 | coding (212/756 nt) | ygeR ← | LysM domain‑containing putative peptidase lipoprotein YgeR |
| RA | 3,008,218 | G→A | A237T (GCC→ACC) | ygeX → | 2,3‑diaminopropionate ammonia‑lyase |
| RA | 3,014,470 | (C)5→6 | coding (588/771 nt) | yqeC ← | uncharacterized protein YqeC |
| RA | 3,014,810 | G→A | P83L (CCC→CTC) | yqeC ← | uncharacterized protein YqeC |
| RA | 3,042,391 | Δ1 bp | intergenic (+98/+98) | ygfZ → / ← yqfA | folate‑binding protein/hemolysin‑III family protein |
| RA | 3,068,157 | T→C | intergenic (‑77/+16) | yggE ← / ← argO | uncharacterized protein YggE/L‑arginine exporter |
| RA | 3,080,925 | T→C | K237K (AAA→AAG) | tktA ← | transketolase 1 |
| RA | 3,084,513 | T→C | N467D (AAC→GAC) | speA ← | arginine decarboxylase, biosynthetic |
| RA | 3,110,512 | (A)7→6 | intergenic (+71/+78) | pheV → / ← yghD | tRNA‑Phe/putative type II secretion system M‑type protein |
| RA | 3,121,491 | T→G | intergenic (‑212/+143) | glcA ← / ← glcB | glycolate/lactate:H(+) symporter GlcA/malate synthase G |
| RA | 3,175,797 | (C)6→7 | coding (210/582 nt) | yqiA ← | esterase YqiA |
| RA | 3,181,068 | (A)5→4 | coding (648/1161 nt) | ygiC → | putative enzyme with ATPase activity |
| RA | 3,184,692 | +G | intergenic (‑226/‑148) | ribB ← / → ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| RA | 3,200,184 | A→G | V261A (GTC→GCC) | ygiF ← | inorganic triphosphatase |
| RA | 3,208,454 | T→C | V144A (GTG→GCG) | ttdT → | L‑tartrate:succinate antiporter |
| RA | 3,276,593 | A→G | T438A (ACC→GCC) | garD → | galactarate dehydratase |
| RA | 3,313,070 | T→C | T37A (ACC→GCC) | rbfA ← | 30S ribosome binding factor |
| RA | 3,313,824 | T→C | T731A (ACC→GCC) | infB ← | translation initiation factor IF‑2 |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,368,591 | G→A | R255R (CGG→CGA) | yhcG → | DUF1016 domain‑containing protein YhcG |
| RA | 3,388,726 | A→G | V134A (GTT→GCT) | aaeA ← | aromatic carboxylic acid efflux pump membrane fusion protein |
| RA | 3,417,574 | T→C | S848P (TCA→CCA) | acrF → | multidrug efflux pump RND permease AcrF |
| RA | 3,467,351 | A→G | F835L (TTC→CTC) | chiA ← | endochitinase |
| RA | 3,490,412 | A→G | C140R (TGC→CGC) | pabA ← | aminodeoxychorismate synthase subunit 2 |
| RA | 3,495,452 | T→C | V481A (GTT→GCT) | nirB → | nitrite reductase catalytic subunit NirB |
| RA | 3,521,143 | T→C | T103A (ACG→GCG) | hofO ← | DNA utilization protein HofO |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,565,807 | (T)5→4 | coding (775/2448 nt) | glgP ← | glycogen phosphorylase |
| RA | 3,577,633 | T→C | intergenic (‑41/+98) | gntK ← / ← gntR | D‑gluconate kinase, thermostable/DNA‑binding transcriptional repressor GntR |
| RA | 3,590,214 | A→G | V233A (GTG→GCG) | ugpA ← | sn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpA |
| RA | 3,616,756 | T→C | L192P (CTG→CCG) | nikC → | Ni(2(+)) ABC transporter membrane subunit NikC |
| RA | 3,617,688 | T→C | V225A (GTA→GCA) | nikD → | Ni(2(+)) ABC transporter ATP binding subunit NikD |
| RA | 3,633,571 | A→G | pseudogene (888/1607 nt) | yhiL ← | putative uncharacterized protein YhiL |
| RA | 3,688,801 | T→C | T125A (ACC→GCC) | bcsC ← | cellulose biosynthesis protein BcsC |
| RA | 3,717,091 | A→G | D182G (GAC→GGC) | yiaD → | PF13488 family lipoprotein YiaD |
| RA | 3,743,478 | T→C | V249A (GTC→GCC) | yiaK → | 2,3‑diketo‑L‑gulonate reductase |
| RA | 3,781,358 | +G | coding (144/474 nt) | trmL → | tRNA (cytidine/uridine‑2'‑O)‑ribose methyltransferase |
| RA | 3,798,725 | A→G | D196D (GAT→GAC) | waaU ← | putative ADP‑heptose:LPS heptosyltransferase 4 |
| RA | 3,799,764 | T→A | I145F (ATC→TTC) | waaZ ← | lipopolysaccharide core biosynthesis protein WaaZ |
| RA | 3,801,399 | A→G | L201L (TTG→CTG) | waaJ ← | UDP‑glucose:(glucosyl)LPS alpha‑1,2‑glucosyltransferase |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,820,592 | (C)6→7 | coding (579/1683 nt) | ligB ← | DNA ligase B |
| RA | 3,852,713 | T→C | E24E (GAA→GAG) | ilvB ← | acetohydroxy acid synthase I subunit IlvB |
| RA | 3,860,630 | (C)5→4 | coding (348/894 nt) | yidL → | putative DNA‑binding transcriptional regulator YidL |
| RA | 3,875,245 | A→G | intergenic (‑85/‑193) | dgoR ← / → yidX | putative DNA‑binding transcriptional regulator DgoR/putative lipoprotein YidX |
| RA | 3,878,829 | A→G | S431P (TCT→CCT) | gyrB ← | DNA gyrase subunit B |
| RA | 3,918,383 | T→C | Y492C (TAC→TGC) | atpA ← | ATP synthase F1 complex subunit alpha |
| RA | 3,924,789 | T→C | D282G (GAC→GGC) | mnmG ← | 5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG |
| RA | 3,958,274 | T→C | V102A (GTG→GCG) | ilvC → | ketol‑acid reductoisomerase (NADP(+)) |
| RA | 3,970,199 | T→C | L23L (TTG→CTG) | wecB → | UDP‑N‑acetylglucosamine 2‑epimerase |
| RA | 4,027,240 | (A)7→6 | intergenic (+12/+369) | fre → / ← fadA | flavin reductase/3‑ketoacyl‑CoA thiolase |
| RA | 4,060,280 | (T)9→8 | intergenic (+50/‑167) | bipA → / → yihL | ribosome‑dependent GTPase, ribosome assembly factor/putative transcriptional regulator YihL |
| RA | 4,066,547 | A→G | R216R (CGT→CGC) | yihP ← | putative 2,3‑dihydroxypropane‑1‑sulfonate export protein |
| RA | 4,084,051 | T→C | N591S (AAC→AGC) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,090,672 | C→T | G85D (GGC→GAC) | frvX ← | peptidase M42 family protein |
| RA | 4,095,814 | (C)6→7 | coding (169/1260 nt) | rhaA ← | L‑rhamnose isomerase |
| RA | 4,155,920 | A→G | D307G (GAC→GGC) | argC → | N‑acetylglutamylphosphate reductase |
| RA | 4,228,038 | A→G | D103G (GAC→GGC) | yjbB → | putative inorganic phosphate export protein |
| RA | 4,244,166 | A→G | C304R (TGT→CGT) | malF ← | maltose ABC transporter membrane subunit MalF |
| RA | 4,272,877 | A→G | V332A (GTC→GCC) | uvrA ← | excision nuclease subunit A |
| RA | 4,285,800 | A→G | G524G (GGT→GGC) | acs ← | acetyl‑CoA synthetase (AMP‑forming) |
| RA | 4,292,161 | +G | coding (650/1659 nt) | nrfE → | putative cytochrome c‑type biogenesis protein NrfE |
| RA | 4,293,152 | (G)5→6 | coding (1641/1659 nt) | nrfE → | putative cytochrome c‑type biogenesis protein NrfE |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,324,212 | T→C | K47K (AAA→AAG) | phnD ← | phosphonate ABC transporter periplasmic binding protein |
| RA | 4,327,860 | A→G | E242E (GAA→GAG) | crfC → | clamp‑binding sister replication fork colocalization protein |
| RA | 4,363,063 | A→G | R82R (CGT→CGC) | yjdC ← | putative DNA‑binding transcriptional regulator YjdC |
| RA | 4,364,243 | A→G | L267P (CTC→CCC) | dsbD ← | protein disulfide oxidoreductase ‑ DsbDreduced |
| RA | 4,432,376 | (G)5→6 | coding (681/966 nt) | ytfF ← | inner membrane protein YtfF |
| RA | 4,437,277 | A→G | T175A (ACC→GCC) | cysQ → | 3'(2'),5'‑bisphosphate nucleotidase |
| RA | 4,442,363 | (A)6→5 | intergenic (‑187/‑19) | msrA ← / → tamA | methionine sulfoxide reductase A/translocation and assembly module subunit TamA |
| RA | 4,445,549 | A→G | T480A (ACC→GCC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,461,803 | A→G | G286G (GGT→GGC) | nrdD ← | anaerobic ribonucleoside‑triphosphate reductase |
| RA | 4,482,624 | A→G | V405A (GTA→GCA) | valS ← | valine‑‑tRNA ligase |
| RA | 4,497,997 | A→G | intergenic (+57/‑275) | intB → / → insC‑6 | KpLE2 phage‑like element; putative integrase/KpLE2 phage‑like element; IS2 insertion element repressor InsA |
| RA | 4,512,668 | G→A | L248F (CTT→TTT) | fecC ← | ferric citrate ABC transporter membrane subunit FecC |
| RA | 4,533,126 | A→G | F20L (TTC→CTC) | yjhP ← | KpLE2 phage‑like element; putative methyltransferase YjhP |
| RA | 4,582,333 | T→C | D239G (GAC→GGC) | hsdM ← | type I restriction enzyme EcoKI methyltransferase component |
| RA | 4,589,575 | A→G | F569L (TTC→CTC) | btsT ← | pyruvate:H(+) symporter |
| RA | 4,601,884 | Δ1 bp | coding (214/474 nt) | yjjB ← | putative succinate exporter YjjB |
| RA | 4,606,215 | (G)8→9 | noncoding (72/87 nt) | leuP ← | tRNA‑Leu |
| RA | 4,606,330 | (G)8→7 | noncoding (72/87 nt) | leuQ ← | tRNA‑Leu |
| MC JC | 4,631,762 | Δ12 bp | coding (1030‑1041/1938 nt) | slt → | soluble lytic murein transglycosylase |
| RA | 4,637,384 | A→G | D230G (GAT→GGT) | creC → | sensory histidine kinase CreC |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423766–3424234 | 3424523–3424239 | 6–758 | 18 [17] | [15] 18 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 374963 | NA (NA) | 15 (0.330) | 11/188 | 2.5 | NA | noncoding (33/34 nt) | other | REP31a |
| ? | NC_000913 | = 377487 | NA (NA) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 375023 = | NA (NA) | 13 (0.280) | 11/190 | 2.5 | NA | intergenic (+142/‑436) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377530 = | NA (NA) | intergenic (+219/+5) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 375118 | NA (NA) | 16 (0.310) | 13/214 | 2.5 | NA | noncoding (1/36 nt) | other | REP31d |
| ? | NC_000913 | = 377333 | NA (NA) | intergenic (+22/+202) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 1207790 = | 2 (0.030) | 71 (1.220) | 50/242 | 0.1 | 97.4% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 2 (0.030) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 2 (0.030) | 37 (0.630) | 29/242 | 0.9 | 95.2% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 2 (0.030) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 81 (1.260) | 53/266 | 0.1 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 95 (1.440) | 93 (1.420) | 61/272 | 0.1 | 65.9% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 2 (0.030) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 89 (1.350) | 62/274 | 0.1 | 92.7% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 7 (0.110) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||