BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,633,571	A→G	pseudogene (888/1607 nt)	yhiL ←	putative uncharacterized protein YhiL

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,633,571	0	A	G	100.0%	393.8 / NA	109	pseudogene (888/1607 nt)	yhiL	putative uncharacterized protein YhiL
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (61/48); total (61/48)

Only 100 of 109 total aligned reads displayed.

CCAGAACGACGACATTTTTATTAATACGGCTATCTTTATTACCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATACAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATGCAGATGAAGCCATCTCTTCG  >  NC_000913/3633435‑3633703

ccagAACGACGACATTTTTATTAATACGGCTATCTTTATTACCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCaa                                                                                                                                   >  2:466126/1‑140 (MQ=255)

    aaCGACGACATTTTTATTAATACGGCTATCTTTATTACCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAgggg                                                                                                                               >  1:73694/1‑140 (MQ=255)

    aaCGACGACATTTTTATTAATACGGCTATCTTTATTACCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAgggg                                                                                                                               >  1:1185707/1‑140 (MQ=255)

    aaCGACGACATTTTTATTAATACGGCTATCTTTATTACCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAgggg                                                                                                                               >  2:352284/1‑140 (MQ=255)

         cgacATTTTTATTAATACGGCTATCTTTATTACCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATc                                                                                                                          >  2:157072/1‑140 (MQ=255)

              tttttATTAATACGGCTATCTTTATTACCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATc                                                                                                                     >  1:854181/1‑140 (MQ=255)

                 ttattaATACGGCTATCTTTATTACCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTc                                                                                                                  <  2:524188/140‑1 (MQ=255)

                  tattaATACGGCTATCTTTATTACCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTTTCGCATCGTcc                                                                                                                 <  2:463142/140‑1 (MQ=255)

                         aCGGCTATCTTTATTGCCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTaaaa                                                                                                          <  2:281705/140‑1 (MQ=255)

                                tCTTTATTACCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATg                                                                                                   >  1:1186611/1‑140 (MQ=255)

                                tCTTTATTACCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATg                                                                                                   >  2:798079/1‑140 (MQ=255)

                                tCTTTATTACCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATg                                                                                                   <  2:149658/140‑1 (MQ=255)

                                 cTTTATTACCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGt                                                                                                  >  1:505326/1‑140 (MQ=255)

                                 cTTTATTACCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGt                                                                                                  >  1:864943/1‑140 (MQ=255)

                                     attaCCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTGTCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGAt                                                                                              >  2:911190/1‑140 (MQ=255)

                                     attaCCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGAt                                                                                              >  1:591186/1‑140 (MQ=255)

                                      ttaCCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTGTCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATg                                                                                             <  1:911190/140‑1 (MQ=255)

                                      ttaCCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATg                                                                                             >  1:689972/1‑140 (MQ=255)

                                       taCCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGc                                                                                            >  2:780355/1‑140 (MQ=255)

                                         cccTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCaa                                                                                          <  1:798079/140‑1 (MQ=255)

                                         cccTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCaa                                                                                          <  2:505326/140‑1 (MQ=255)

                                         cccTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCaa                                                                                          <  1:962724/140‑1 (MQ=255)

                                           cTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAATGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACt                                                                                        >  2:1126663/1‑140 (MQ=255)

                                           cTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCaa                                                                                          >  1:72663/1‑138 (MQ=255)

                                           cTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCaa                                                                                          >  1:378599/1‑138 (MQ=255)

                                           cTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCaa                                                                                          <  2:72663/138‑1 (MQ=255)

                                           cTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACt                                                                                        <  1:913513/140‑1 (MQ=255)

                                           cTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACt                                                                                        >  2:699412/1‑140 (MQ=255)

                                            tCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAAc                                                                                         >  2:1015232/1‑138 (MQ=255)

                                            tCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAAc                                                                                         <  1:1015232/138‑1 (MQ=255)

                                            tCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACt                                                                                        <  2:747292/139‑1 (MQ=255)

                                            tCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACt                                                                                        >  1:747292/1‑139 (MQ=255)

                                            tCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTc                                                                                       >  1:698365/1‑140 (MQ=255)

                                            tCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTc                                                                                       >  1:1163074/1‑140 (MQ=255)

                                            tCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTc                                                                                       >  2:181701/1‑140 (MQ=255)

                                            tCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTc                                                                                       >  1:47850/1‑140 (MQ=255)

                                            tCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTc                                                                                       >  1:780341/1‑140 (MQ=255)

                                              cATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCAt                                                                                     >  2:213419/1‑140 (MQ=255)

                                               atatTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCAtt                                                                                    <  1:490095/140‑1 (MQ=255)

                                                     cGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAAc                                                                                         <  1:860180/129‑1 (MQ=255)

                                                     cGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAAc                                                                                         >  2:860180/1‑129 (MQ=255)

                                                     cGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGAt                                                                              >  2:59672/1‑140 (MQ=255)

                                                       cATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCa                                                                            >  1:1166720/1‑140 (MQ=255)

                                                       cATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCa                                                                            >  2:1169826/1‑140 (MQ=255)

                                                          aGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGt                                                                         <  2:698365/140‑1 (MQ=255)

                                                          aGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGt                                                                         <  2:1163074/140‑1 (MQ=255)

                                                            aaTTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGtct                                                                       >  1:925348/1‑140 (MQ=255)

                                                            aaTTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGtct                                                                       <  1:1126663/140‑1 (MQ=255)

                                                             aTTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGtctc                                                                      <  2:1186611/140‑1 (MQ=255)

                                                                    aaaGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTAtt                                                               <  2:47850/140‑1 (MQ=255)

                                                                      aGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTta                                                             >  2:909467/1‑140 (MQ=255)

                                                                      aGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTta                                                             >  1:136289/1‑140 (MQ=255)

                                                                         aaGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTtaata                                                          <  1:169130/140‑1 (MQ=255)

                                                                         aaGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTtaata                                                          <  1:809744/140‑1 (MQ=255)

                                                                           ggATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATaaa                                                        <  2:1166720/140‑1 (MQ=255)

                                                                              tatatTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCg                                                     <  1:699412/140‑1 (MQ=255)

                                                                                tatTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTa                                                   >  2:660285/1‑140 (MQ=255)

                                                                                 atTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTag                                                  >  2:175408/1‑140 (MQ=255)

                                                                                  tttATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCGCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTaga                                                 >  2:522629/1‑140 (MQ=255)

                                                                                  tttATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTaga                                                 >  2:335489/1‑140 (MQ=255)

                                                                                   ttATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTagag                                                <  1:1169826/140‑1 (MQ=255)

                                                                                   ttATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAAACGTagag                                                <  2:136289/140‑1 (MQ=255)

                                                                                    tATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGc                                               >  2:311471/1‑140 (MQ=255)

                                                                                     aTCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCa                                              <  2:505859/140‑1 (MQ=255)

                                                                                      tCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCAc                                             >  1:601370/1‑140 (MQ=255)

                                                                                       cACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTagag                                                >  2:669430/1‑136 (MQ=255)

                                                                                       cACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTagag                                                <  1:669430/136‑1 (MQ=255)

                                                                                          cAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTtta                                         >  1:599821/1‑140 (MQ=255)

                                                                                          cAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTtta                                         <  1:909467/140‑1 (MQ=255)

                                                                                          cAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTtta                                         <  2:599821/140‑1 (MQ=255)

                                                                                            aaaaTAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTttatt                                       >  1:234313/1‑140 (MQ=255)

                                                                                            aaaaTAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTttatt                                       <  2:73694/140‑1 (MQ=255)

                                                                                              aaTAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTtattat                                     <  1:118718/140‑1 (MQ=255)

                                                                                                   tACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTa                                >  1:1110581/1‑140 (MQ=255)

                                                                                                    aCTAAATCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTAt                               >  1:56555/1‑140 (MQ=255)

                                                                                                       aaaTCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGtt                            >  1:281636/1‑140 (MQ=255)

                                                                                                        aaTCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGttt                           <  2:854181/140‑1 (MQ=255)

                                                                                                          tCTATCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGt                         >  1:983047/1‑140 (MQ=255)

                                                                                                             aTCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATg                      <  2:864943/140‑1 (MQ=255)

                                                                                                             aTCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATg                      <  2:802671/140‑1 (MQ=255)

                                                                                                             aTCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATg                      <  2:234313/140‑1 (MQ=255)

                                                                                                             aTCGCCTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATg                      <  2:925348/140‑1 (MQ=255)

                                                                                                                  cTGTATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATGCAGAt                 <  1:352284/140‑1 (MQ=255)

                                                                                                                     tATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATg                      >  2:930543/1‑132 (MQ=255)

                                                                                                                     tATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATg                      <  2:64907/132‑1 (MQ=255)

                                                                                                                     tATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATg                      <  1:930543/132‑1 (MQ=255)

                                                                                                                     tATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATg                      >  1:64907/1‑132 (MQ=255)

                                                                                                                     tATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATGCAGATGaa              >  2:272274/1‑140 (MQ=255)

                                                                                                                     tATGATCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATGCAGATGaa              >  1:1057460/1‑140 (MQ=255)

                                                                                                                          tCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATGCAGATGAAGCCAt         >  2:810566/1‑140 (MQ=255)

                                                                                                                          tCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATGCAGATGAAGCCAt         <  1:175408/140‑1 (MQ=255)

                                                                                                                          tCCCCAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATGCAGATGAAGCCAt         >  1:130241/1‑140 (MQ=255)

                                                                                                                            cccAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATGCAGATGAAGcc           >  2:587714/1‑136 (MQ=255)

                                                                                                                            cccAAGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATGCAGATGAAGCCAtct       >  2:68507/1‑140 (MQ=255)

                                                                                                                               aaGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATGCAGATGAAGCCATCTCtt    >  2:671738/1‑140 (MQ=255)

                                                                                                                               aaGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATGCAGATGAAGCCATCTCtt    <  2:601370/140‑1 (MQ=255)

                                                                                                                               aaGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATGCAGATGAAGCCATCTCtt    >  2:356344/1‑140 (MQ=255)

                                                                                                                                aGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATGCAGATGAAGCCATCTCTTc   <  2:724698/140‑1 (MQ=255)

                                                                                                                                aGGAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATGCAGATGAAGCCATCTCTTc   <  1:240615/140‑1 (MQ=255)

                                                                                                                                 ggAAGATGCAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATGCAGATGAAGCCATCTCTTCg  >  2:271018/1‑140 (MQ=255)

CCAGAACGACGACATTTTTATTAATACGGCTATCTTTATTACCCTCCATATTTCGCATAGAATTTAGCAAAGTAAGGATATATTTATCACCAAAAATAGTACTAAATCTATCGCCTGTATGATCCCCAAGGAAGATACAAGGGGTTATCGCATCGTCCTTTAAAAAAACATGTTGATGCAACTCATTCAAGATCATGTCTCTCGTATTTAATAAATCGTAGAGCACTTTATTATTTTTATGTTTGTATGCAGATGAAGCCATCTCTTCG  >  NC_000913/3633435‑3633703

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`