Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,442,363 (A)6→5 intergenic (‑187/‑19) msrA ← / → tamA methionine sulfoxide reductase A/translocation and assembly module subunit TamA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,442,3580A.100.0% 225.7 / NA 54intergenic (‑182/‑24)msrA/tamAmethionine sulfoxide reductase A/translocation and assembly module subunit TamA
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (28/26);  total (28/26)

ACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGG  >  NC_000913/4442220‑4442487
                                                                                                                                          |                                                                                                                                 
aCAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGaa                                                                                                                                  <  1:578748/140‑1 (MQ=255)
aCAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGaa                                                                                                                                  <  1:241842/140‑1 (MQ=255)
    gagGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGaaaaag                                                                                                                              >  2:166707/1‑139 (MQ=255)
    gagGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGaaaaag                                                                                                                              >  1:442427/1‑139 (MQ=255)
     agGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGaaaaagg                                                                                                                             <  1:825930/140‑3 (MQ=255)
                    caATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGaaaa                                                                                                             >  2:542975/1‑140 (MQ=255)
                     aaTAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAAt                                                                                                            >  1:545908/1‑140 (MQ=255)
                     aaTAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAAt                                                                                                            >  1:517298/1‑140 (MQ=255)
                     aaTAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAAt                                                                                                            <  1:50883/140‑1 (MQ=255)
                      aTAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAAtg                                                                                                           >  2:268028/1‑140 (MQ=255)
                        aaCCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAAtgtg                                                                                                         <  2:911976/140‑1 (MQ=255)
                        aaCCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAAtgtg                                                                                                         <  2:372351/140‑1 (MQ=255)
                          ccaccGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTgcg                                                                                                       <  2:1134637/140‑1 (MQ=255)
                          ccaccGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTgcg                                                                                                       <  2:442427/140‑1 (MQ=255)
                               gTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCtata                                                                                                  >  2:344873/1‑140 (MQ=255)
                               gTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCtata                                                                                                  >  2:553672/1‑140 (MQ=255)
                                 gAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATc                                                                                                >  2:408751/1‑140 (MQ=255)
                                  aaTAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTgcg                                                                                                       >  2:853244/1‑132 (MQ=255)
                                  aaTAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTgcg                                                                                                       <  1:853244/132‑1 (MQ=255)
                                            aaGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATg                                                                                     >  2:1010960/1‑140 (MQ=255)
                                             aGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGc                                                                                    >  2:362390/1‑140 (MQ=255)
                                               tAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCtg                                                                                  <  1:542975/140‑1 (MQ=255)
                                                 aaaCATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCtgtg                                                                                <  2:517298/140‑1 (MQ=255)
                                                  aaCATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTgtgt                                                                               >  1:263813/1‑140 (MQ=255)
                                                      tAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGc                                                                           <  1:945197/140‑1 (MQ=255)
                                                       aaGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAg                                                                                          >  1:747057/1‑124 (MQ=255)
                                                       aaGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAg                                                                                          <  2:747057/124‑1 (MQ=255)
                                                            atatTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTActc                                                                     >  2:696385/1‑140 (MQ=255)
                                                            atatTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTActc                                                                     >  1:198861/1‑140 (MQ=255)
                                                               tttGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGc                                                                  <  1:1025139/140‑1 (MQ=255)
                                                                    ggTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAg                                                             >  1:948006/1‑140 (MQ=255)
                                                                         aGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGAt                                                        <  1:362390/140‑1 (MQ=255)
                                                                            cTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTg                                                     <  1:1108464/140‑1 (MQ=255)
                                                                                         cATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGaa                                        <  1:852308/140‑1 (MQ=255)
                                                                                            atTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAAcgt                                     <  1:737226/140‑1 (MQ=255)
                                                                                            atTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAAcgt                                     >  1:673513/1‑140 (MQ=255)
                                                                                            atTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAAcgt                                     <  1:166707/140‑1 (MQ=255)
                                                                                             ttACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAAcgtc                                    <  2:545908/140‑1 (MQ=255)
                                                                                                 tGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAAcgtccgtc                                >  2:518760/1‑140 (MQ=255)
                                                                                                   gATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAGCGTCCGTCTa                              >  2:749621/1‑140 (MQ=255)
                                                                                                   gATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAAcgtc                                    <  2:954138/134‑1 (MQ=255)
                                                                                                   gATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAAcgtc                                    >  1:954138/1‑134 (MQ=255)
                                                                                                   gATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTa                              >  2:1179074/1‑140 (MQ=255)
                                                                                                   gATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTa                              >  1:176071/1‑140 (MQ=255)
                                                                                                    aTTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTAc                             <  2:263813/140‑1 (MQ=255)
                                                                                                    aTTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTAc                             <  2:340702/140‑1 (MQ=255)
                                                                                                    aTTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTAc                             <  1:344873/140‑1 (MQ=255)
                                                                                                     tttttGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACa                            >  2:958544/1‑140 (MQ=255)
                                                                                                     tttttGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACa                            >  2:941581/1‑140 (MQ=255)
                                                                                                     tttttGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACa                            >  1:990928/1‑140 (MQ=255)
                                                                                                        ttGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGt                         >  2:64069/1‑140 (MQ=255)
                                                                                                           ttAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGa                      >  2:755037/1‑140 (MQ=255)
                                                                                                             aaGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAgg                    <  2:673513/140‑1 (MQ=255)
                                                                                                              aGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAggg                   <  2:948006/140‑1 (MQ=255)
                                                                                                                   tttAACGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTAt              <  2:198861/140‑1 (MQ=255)
                                                                                                                       aCGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCggg          <  1:479527/140‑1 (MQ=255)
                                                                                                                       aCGGCGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCggg          <  1:719056/140‑1 (MQ=255)
                                                                                                                           cGTTCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAg      >  1:1176858/1‑140 (MQ=255)
                                                                                                                             ttCCAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCt    >  2:649183/1‑140 (MQ=255)
                                                                                                                               ccAGGGGCAGGAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTgg  <  1:553672/140‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                 
ACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTTGTTAAGCCGTTTAACGGCGTTCCAGGGGCAGGAAAAAAGGATATTCAGGAGAAAATGTGCGCTATATCCGACAGTTATGCTGTGTAAGCTTACTCTGCTTAAGCGGATCTGCCGTCGCCGCGAACGTCCGTCTACAGGTCGAGGGGTTATCGGGACAGCTGG  >  NC_000913/4442220‑4442487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: