mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 17,621 | C→T | P45S (CCG→TCG) | nhaA → | Na(+):H(+) antiporter NhaA |
| RA | 17,988 | C→G | A167G (GCC→GGC) | nhaA → | Na(+):H(+) antiporter NhaA |
| RA | 23,375 | A→G | T329A (ACC→GCC) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 28,668 | A→G | M99V (ATG→GTG) | dapB → | 4‑hydroxy‑tetrahydrodipicolinate reductase |
| RA | 28,886 | A→G | A171A (GCA→GCG) | dapB → | 4‑hydroxy‑tetrahydrodipicolinate reductase |
| RA | 53,752 | A→G | G317G (GGT→GGC) | surA ← | peptidyl‑prolyl cis‑trans isomerase SurA |
| RA | 90,891 | A→G | L266L (TTA→TTG) | rsmH → | 16S rRNA m(4)C1402 methyltransferase |
| RA | 121,462 | C→T | G30G (GGG→GGA) | aroP ← | aromatic amino acid:H(+) symporter AroP |
| RA | 124,972 | T→C | T652T (ACT→ACC) | aceE → | pyruvate dehydrogenase E1 component |
| RA | 211,504 | C→T | A609V (GCA→GTA) | ldcC → | lysine decarboxylase 2 |
| RA | 226,641 | (G)5→6 | noncoding (883/2904 nt) | rrlH → | 23S ribosomal RNA |
| RA | 226,952 | A→G | noncoding (1194/2904 nt) | rrlH → | 23S ribosomal RNA |
| RA | 234,812 | T→C | intergenic (‑30/‑4) | gloB ← / → yafS | hydroxyacylglutathione hydrolase GloB/putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| RA | 239,850 | C→T | A114T (GCA→ACA) | yafV ← | 2‑oxoglutaramate amidase |
| RA | 247,481 | C→T | intergenic (+20/‑156) | yafL → / → rayT | NlpC/P60 family protein YafL/REP‑associated tyrosine transposase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 260,332 | T→C | intergenic (‑232/‑56) | phoE ← / → proB | outer membrane porin PhoE/glutamate 5‑kinase |
| RA | 269,687 | T→C | T166A (ACG→GCG) | perR ← | putative transcriptional regulator PerR |
| RA | 287,696 | C→T | P303L (CCG→CTG) | yagH → | CP4‑6 prophage; putative xylosidase/arabinosidase |
| RA | 303,267 | A→G | T93A (ACC→GCC) | yagU → | inner membrane protein that contributes to acid resistance |
| RA | 304,952 | (G)6→7 | coding (254/711 nt) | ecpE ← | putative fimbrial chaperone EcpE |
| RA | 350,999 | G→A | V330I (GTT→ATT) | prpC → | 2‑methylcitrate synthase |
| RA | 354,626 | C→T | intergenic (+34/‑296) | prpE → / → codB | propionyl‑CoA synthetase/cytosine transporter |
| RA | 366,116 | A→G | F64L (TTT→CTT) | lacZ ← | beta‑galactosidase |
| RA | 380,022 | (G)10→11 | intergenic (‑141/+47) | frmR ← / ← yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| RA | 383,499 | A→G | I146T (ATT→ACT) | yaiP ← | putative glucosyltransferase |
| RA | 467,420 | T→C | R3R (CGT→CGC) | cof → | HMP‑PP phosphatase |
| RA | 468,271 | (T)8→7 | intergenic (+41/‑112) | cof → / → decR | HMP‑PP phosphatase/DNA‑binding transcriptional activator DecR |
| RA | 505,563 | A→G | H217R (CAT→CGT) | ushA → | 5'‑nucleotidase/UDP‑sugar hydrolase |
| RA | 527,577 | T→C | intergenic (+36/‑4) | rhsD → / → ybbC | protein RhsD/PF15631 family protein YbbC |
| RA | 561,696 | (G)6→7 | coding (2000/2604 nt) | sfmD → | putative fimbrial usher protein SfmD |
| RA | 575,712 | A→G | S14S (AGT→AGC) | insH‑2 ← | DLP12 prophage; IS5 transposase and trans‑activator |
| RA | 606,748 | A→G | S212S (AGT→AGC) | ybdK ← | carboxylate‑amine ligase |
| RA | 618,449 | A→G | T66A (ACC→GCC) | fepE → | polysaccharide co‑polymerase family protein FepE |
| RA | 621,770 | A→G | S140S (AGT→AGC) | fepD ← | ferric enterobactin ABC transporter membrane subunit FebD |
| RA | 634,844 | C→T | G178E (GGA→GAA) | ybdM ← | ParB‑like nuclease domain‑containing protein YbdM |
| RA | 659,197 | C→A | intergenic (+47/+54) | tatE → / ← lipA | twin arginine protein translocation system ‑ TatE protein/lipoyl synthase |
| RA | 701,376 | G→A | G73G (GGC→GGT) | nagC ← | DNA‑binding transcriptional dual regulator NagC |
| RA | 738,636 | A→G | E182G (GAG→GGG) | ybfD → | H repeat‑associated putative transposase YbfD |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 934,839 | T→C | V539A (GTA→GCA) | ftsK → | cell division DNA translocase FtsK |
| RA | 949,458 | A→G | S37S (AGT→AGC) | ycaN ← | putative LysR‑type transcriptional regulator YcaN |
| RA | 951,066 | A→G | G5G (GGT→GGC) | pflA ← | pyruvate formate‑lyase activating enzyme |
| RA | 979,231 | A→G | H969R (CAC→CGC) | mukB → | chromosome partitioning protein MukB |
| RA | 1,010,898 | C→T | A312V (GCC→GTC) | uup → | ATP‑binding protein with possible role in replication |
| RA | 1,064,792 | G→A | A253T (GCT→ACT) | yccE → | uncharacterized protein YccE |
| RA | 1,129,031 | A→G | N398S (AAC→AGC) | murJ → | putative lipid II flippase MurJ |
| RA | 1,130,113 | T→C | T6A (ACT→GCT) | flgM ← | anti‑sigma factor for FliA (sigma(28)) |
| RA | 1,143,140 | T→C | T410A (ACT→GCT) | rne ← | ribonuclease E |
| RA | 1,162,501 | Δ1 bp | coding (255/378 nt) | ycfL → | DUF1425 domain‑containing protein YcfL |
| RA | 1,174,594 | A→G | V191A (GTG→GCG) | ycfT ← | inner membrane protein YcfT |
| RA | 1,220,971 | G→A | pseudogene (1371/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,255,335 | A→G | S206S (AGT→AGC) | ycgV ← | putative autotransporter adhesin YcgV |
| RA | 1,271,762 | A→G | W30R (TGG→CGG) | chaA ← | Na(+)/K(+):H(+) antiporter ChaA |
| RA | 1,351,196 | (G)7→6 | intergenic (‑157/+211) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase/DUF559 domain‑containing protein YcjD |
| RA | 1,353,680 | A→G | V280A (GTT→GCT) | sapC ← | putrescine ABC exporter membrane protein SapC |
| RA | 1,399,985 | (C)7→8 | coding (252/516 nt) | ogt ← | methylated‑DNA‑‑[protein]‑cysteine S‑methyltransferase |
| RA | 1,410,560 | A→G | A350A (GCA→GCG) | dbpA → | ATP‑dependent RNA helicase DbpA |
| RA | 1,437,610 | A→G | Y1059H (TAT→CAT) | ydbK ← | putative pyruvate‑flavodoxin oxidoreductase |
| RA | 1,447,666 | T→C | S50P (TCT→CCT) | feaB → | phenylacetaldehyde dehydrogenase |
| RA | 1,452,470 | T→C | V391V (GTA→GTG) | paaZ ← | oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
| RA | 1,539,368 | G→A | Q1075* (CAG→TAG) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,541,351 | C→T | E414K (GAA→AAA) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,559,278 | T→C | L211L (CTA→CTG) | ddpC ← | putative D,D‑dipeptide ABC transporter membrane subunit DdpC |
| RA | 1,578,090 | G→A | P418L (CCG→CTG) | yddA ← | ABC transporter family protein YddA |
| RA | 1,609,314 | A→G | V456A (GTG→GCG) | uxaB ← | tagaturonate reductase |
| RA | 1,641,619 | T→C | intergenic (‑65/‑236) | cspB ← / → cspF | Qin prophage; cold shock‑like protein CspB/Qin prophage; cold shock protein CspF |
| RA | 1,648,011 | T→C | L26L (CTT→CTC) | dicA → | DNA‑binding transcriptional dual regulator DicA |
| RA | 1,654,770 | G→A | T124T (ACC→ACT) | rspA ← | mandelate racemase/muconate lactonizing enzyme family protein RspA |
| RA | 1,655,245 | (A)7→8 | intergenic (‑104/+102) | rspA ← / ← ynfA | mandelate racemase/muconate lactonizing enzyme family protein RspA/conserved inner membrane protein YnfA |
| RA | 1,664,769 | (G)5→6 | coding (264/615 nt) | dmsD → | redox enzyme maturation protein DmsD |
| RA | 1,685,542 | (C)6→5 | coding (1047/1404 nt) | fumC ← | fumarase C |
| RA | 1,700,566 | G→A | A404A (GCG→GCA) | malX → | PTS enzyme IIBC component MalX |
| RA | 1,793,506 | G→A | P18L (CCG→CTG) | btuD ← | vitamin B12 ABC transporter ATP binding subunit |
| RA | 1,804,622 | T→C | pseudogene (1529/1900 nt) | arpB → | putative ankyrin repeat protein B, N‑terminal fragment |
| RA | 1,808,009 | A→G | T72A (ACC→GCC) | yniA → | putative kinase YniA |
| RA | 1,818,550 | (C)7→8 | intergenic (‑50/+55) | chbF ← / ← chbR | monoacetylchitobiose‑6‑phosphate hydrolase/DNA‑binding transcriptional dual regulator ChbR |
| RA | 1,819,092 | T→C | Y119C (TAC→TGC) | chbR ← | DNA‑binding transcriptional dual regulator ChbR |
| RA | 1,821,029 | A→G | Y62Y (TAT→TAC) | chbC ← | N,N'‑diacetylchitobiose‑specific PTS enzyme IIC component |
| RA | 1,873,384 | A→G | K448K (AAA→AAG) | dgcJ → | putative diguanylate cyclase DgcJ |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,891,751 | (C)5→6 | coding (1485/1911 nt) | yoaA ← | putative 5' to 3' DNA helicase implicated in DNA repair |
| RA | 1,900,948 | T→C | Y213C (TAC→TGC) | yoaE ← | putative inner membrane protein |
| RA | 1,949,990 | A→G | V178A (GTG→GCG) | aspS ← | aspartate‑‑tRNA ligase |
| RA | 1,965,961 | G→A | I77I (ATC→ATT) | flhB ← | flagellar biosynthesis protein FlhB |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,071,643 | T→C | G35G (GGT→GGC) | flu → | CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter |
| RA | 2,106,131 | T→C | S366G (AGC→GGC) | wbbH ← | putative O‑antigen polymerase |
| RA | 2,131,907 | A→G | V55A (GTC→GCC) | wcaC ← | putative colanic acid biosynthesis glycosyl transferase |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,197,963 | A→G | intergenic (+665/‑2316) | yehF → / → yehI | putative protein YehF/DUF4132 domain‑containing protein YehI |
| RA | 2,225,973 | T→C | V58A (GTG→GCG) | yohD → | DedA family protein YohD |
| RA | 2,234,242 | T→C | G70G (GGT→GGC) | preT → | NAD‑dependent dihydropyrimidine dehydrogenase subunit PreT |
| RA | 2,245,118 | T→C | Y551C (TAC→TGC) | cirA ← | ferric dihyroxybenzoylserine outer membrane transporter |
| RA | 2,337,694 | T→C | D576G (GAC→GGC) | gyrA ← | DNA gyrase subunit A |
| RA | 2,347,489 | A→G | I36V (ATC→GTC) | nrdB → | ribonucleoside‑diphosphate reductase 1 subunit beta |
| RA | 2,376,357 | T→C | T155A (ACT→GCT) | menB ← | 1,4‑dihydroxy‑2‑naphthoyl‑CoA synthase |
| RA | 2,387,282 | C→T | L117F (CTC→TTC) | yfbM → | DUF1877 domain‑containing protein YfbM |
| RA | 2,394,574 | T→C | Y158C (TAC→TGC) | nuoL ← | NADH:quinone oxidoreductase subunit L |
| RA | 2,407,664 | T→C | V35A (GTA→GCA) | alaA → | glutamate‑‑pyruvate aminotransferase AlaA |
| RA | 2,431,321 | G→A | P122S (CCA→TCA) | dedD ← | cell division protein DedD |
| RA | 2,446,579 | T→C | T299A (ACC→GCC) | aroC ← | chorismate synthase |
| RA | 2,462,889 | (C)9→8 | intergenic (+243/‑123) | fadL → / → yfdF | long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF |
| RA | 2,465,426 | G→A | E42E (GAG→GAA) | yfdC → | inner membrane protein YfdC |
| RA | 2,477,075 | T→C | R185R (AGA→AGG) | dsdC ← | DNA‑binding transcriptional dual regulator DsdC |
| RA | 2,497,028 | G→A | intergenic (+36/+29) | ypdK → / ← alaC | putative membrane protein YpdK/glutamate‑‑pyruvate aminotransferase AlaC |
| RA | 2,527,823 | T→C | V293A (GTG→GCG) | yfeH → | putative solute:Na(+) symporter |
| RA | 2,558,955 | (T)5→6 | coding (98/1209 nt) | intZ → | CPZ‑55 prophage; putative phage integrase IntZ |
| RA | 2,636,979 | A→T | D126E (GAT→GAA) | der ← | 50S ribosomal subunit stability factor |
| RA | 2,694,519 | A→G | I342T (ATT→ACT) | purL ← | phosphoribosylformylglycinamide synthetase |
| RA | 2,723,931 | A→G | E402G (GAG→GGG) | pssA → | phosphatidylserine synthase |
| RA | 2,779,579 | T→C | T1050A (ACC→GCC) | ypjA ← | adhesin‑like autotransporter YpjA |
| RA | 2,795,349 | G→A | S366N (AGC→AAC) | gabP → | 4‑aminobutyrate:H(+) symporter |
| RA | 2,798,536 | T→C | intergenic (‑41/‑628) | stpA ← / → alaE | DNA‑binding transcriptional repressor StpA with RNA chaperone activity/L‑alanine exporter |
| RA | 2,803,182 | G→A | R612H (CGC→CAC) | nrdE → | ribonucleoside‑diphosphate reductase 2 subunit alpha |
| RA | 2,811,134 | A→G | H122R (CAC→CGC) | mprA → | DNA‑binding transcriptional repressor MprA |
| RA | 2,821,424 | G→C | G196G (GGC→GGG) | alaS ← | alanine‑‑tRNA ligase/DNA‑binding transcriptional repressor |
| MC JC | 2,857,096 | Δ2,538 bp | coding (4‑2541/2562 nt) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,949,993 | (T)5→6 | coding (752/1332 nt) | argA → | N‑acetylglutamate synthase |
| RA | 2,973,440 | T→C | E141E (GAA→GAG) | lplT ← | lysophospholipid transporter |
| RA | 2,992,984 | T→C | C297C (TGT→TGC) | ygeH → | putative transcriptional regulator YgeH |
| RA | 2,999,380 | T→C | N171S (AAC→AGC) | ygeR ← | LysM domain‑containing putative peptidase lipoprotein YgeR |
| RA | 3,006,724 | G→A | A155T (GCT→ACT) | ygeW → | putative carbamoyltransferase YgeW |
| RA | 3,042,241 | A→G | D310G (GAC→GGC) | ygfZ → | folate‑binding protein |
| RA | 3,048,407 | A→G | V212A (GTC→GCC) | gcvP ← | glycine decarboxylase |
| RA | 3,052,056 | T→C | S88G (AGC→GGC) | ubiI ← | 2‑octaprenylphenol hydroxylase |
| RA | 3,052,577 | A→C | T314T (ACT→ACG) | ubiH ← | 2‑octaprenyl‑6‑methoxyphenol hydroxylase |
| RA | 3,065,717 | G→A | A306T (GCC→ACC) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,068,157 | T→C | intergenic (‑77/+16) | yggE ← / ← argO | uncharacterized protein YggE/L‑arginine exporter |
| RA | 3,089,159 | (G)5→6 | coding (876/1395 nt) | galP → | galactose:H(+) symporter |
| RA | 3,106,787 | T→C | C358C (TGT→TGC) | nupG → | nucleoside:H(+) symporter NupG |
| RA | 3,181,423 | G→A | V335I (GTT→ATT) | ygiC → | putative enzyme with ATPase activity |
| RA | 3,182,227 | T→C | T70A (ACG→GCG) | ygiD ← | 4,5‑DOPA dioxygenase extradiol |
| RA | 3,198,913 | T→C | E243E (GAA→GAG) | glnE ← | fused glutamine synthetase deadenylase/glutamine synthetase adenylyltransferase |
| RA | 3,235,383 | T→C | T165A (ACG→GCG) | rlmG ← | 23S rRNA m(2)G1835 methyltransferase |
| RA | 3,258,693 | (C)5→6 | coding (957/1365 nt) | tdcG ← | L‑serine deaminase III |
| RA | 3,259,315 | T→C | N112S (AAC→AGC) | tdcG ← | L‑serine deaminase III |
| RA | 3,291,948 | A→G | D203G (GAC→GGC) | yraK → | putative fimbrial adhesin YraK |
| RA | 3,338,233 | T→C | T77A (ACC→GCC) | mlaD ← | intermembrane phospholipid transport system, substrate binding protein MlaD |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,373,213 | A→G | Y122H (TAT→CAT) | nanA ← | N‑acetylneuraminate lyase |
| RA | 3,374,862 | T→C | intergenic (‑373/‑7) | nanR ← / → dcuD | DNA‑binding transcriptional dual regulator NanR/putative transporter DcuD |
| RA | 3,388,726 | A→G | V134A (GTT→GCT) | aaeA ← | aromatic carboxylic acid efflux pump membrane fusion protein |
| RA | 3,430,461 | G→A | G126G (GGC→GGT) | aroE ← | shikimate dehydrogenase |
| RA | 3,489,822 | C→T | R120H (CGC→CAC) | argD ← | N‑acetylornithine aminotransferase/N‑succinyldiaminopimelate aminotransferase |
| RA | 3,502,200 | G→A | V311V (GTG→GTA) | frlB → | fructoselysine 6‑phosphate deglycase |
| RA | 3,516,831 | G→A | P159L (CCG→CTG) | damX ← | cell division protein DamX |
| RA | 3,541,499 | T→C | S365P (TCC→CCC) | feoB → | Fe(2(+)) transporter FeoB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,566,223 | C→T | G120D (GGC→GAC) | glgP ← | glycogen phosphorylase |
| RA | 3,645,118 | A→G | V22A (GTC→GCC) | prlC ← | oligopeptidase A |
| RA | 3,709,561 | (C)6→7 | coding (915/1692 nt) | eptB ← | Kdo2‑lipid A phosphoethanolamine 7''‑transferase |
| RA | 3,756,167 | G→A | P115P (CCC→CCT) | aldB ← | aldehyde dehydrogenase B |
| RA | 3,809,588 | C→T | P350L (CCG→CTG) | waaA → | KDO transferase |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,860,630 | (C)5→4 | coding (348/894 nt) | yidL → | putative DNA‑binding transcriptional regulator YidL |
| RA | 3,960,851 | G→A | A59T (GCA→ACA) | rep → | ATP‑dependent DNA helicase Rep |
| RA | 4,096,745 | C→T | S235N (AGC→AAC) | rhaB ← | rhamnulokinase |
| RA | 4,101,728 | (G)7→8 | coding (39/984 nt) | kdgT → | 2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter |
| RA | 4,186,523 | A→G | T392A (ACC→GCC) | rpoC → | RNA polymerase subunit beta' |
| RA | 4,204,531 | A→G | E404E (GAA→GAG) | zraR → | DNA‑binding transcriptional activator ZraR |
| RA | 4,271,122 | A→G | V917A (GTC→GCC) | uvrA ← | excision nuclease subunit A |
| RA | 4,291,652 | C→T | S47S (AGC→AGT) | nrfE → | putative cytochrome c‑type biogenesis protein NrfE |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,413,019 | A→G | G211G (GGA→GGG) | yjfM → | DUF1190 domain‑containing protein YjfM |
| RA | 4,444,316 | G→A | G69S (GGC→AGC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,444,616 | A→G | T169A (ACC→GCC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,444,672 | A→G | E187E (GAA→GAG) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,445,549 | A→G | T480A (ACC→GCC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,476,836 | T→C | L467P (CTA→CCA) | yjgL → | protein YjgL |
| JC JC | 4,498,056 | IS1 (–) +9 bp | intergenic (+116/‑208) | intB → / → insC‑6 | KpLE2 phage‑like element; putative integrase/KpLE2 phage‑like element; IS2 insertion element repressor InsA |
| RA | 4,539,524 | A→G | intergenic (‑23/‑1433) | nanC ← / → fimB | N‑acetylneuraminic acid outer membrane channel/regulator for fimA |
| RA | 4,593,647 | A→G | V359A (GTT→GCT) | lgoT ← | galactonate:H(+) symporter |
| RA | 4,599,309 | G→A | L45L (CTG→TTG) | opgB ← | phosphoglycerol transferase I |
| RA | 4,606,215 | (G)8→9 | noncoding (72/87 nt) | leuP ← | tRNA‑Leu |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1633344–1633623 | 1634911–1634641 | 1019–1568 | 6 [5] | [5] 7 | pinQ–[ydfN] | pinQ,tfaQ,[ydfN] |
| * | * | ÷ | NC_000913 | 3423785–3424232 | 3424525–3424241 | 10–741 | 7 [5] | [5] 7 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 3762367–3764074 | 3765169–3764077 | 4–2803 | 6 [5] | [5] 6 | rhsA | rhs element protein RhsA |
| * | * | ÷ | NC_000913 | 4166410–4168220 | 4171522–4168572 | 353–5113 | 6 [4] | [5] 6 | rrsB–[rrlB] | rrsB,gltT,[rrlB] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 340115 | NA (NA) | 3 (0.120) | 3/216 | 2.9 | NA | noncoding (1/29 nt) | other | REPv23h |
| ? | NC_000913 | = 3269720 | NA (NA) | intergenic (+118/+496) | yhaC/rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component | |||||
| * | ? | NC_000913 | 374921 = | NA (NA) | 21 (0.970) | 8/190 | 1.2 | NA | intergenic (+40/‑538) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377531 = | NA (NA) | intergenic (+220/+4) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 374922 = | NA (NA) | 26 (0.870) | 12/260 | 1.2 | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377329 = | NA (NA) | intergenic (+18/+206) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 374963 | NA (NA) | 19 (0.870) | 10/190 | 0.9 | NA | noncoding (33/34 nt) | other | REP31a |
| ? | NC_000913 | = 377487 | NA (NA) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 375023 = | NA (NA) | 5 (0.230) | 5/192 | 1.9 | NA | intergenic (+142/‑436) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377530 = | NA (NA) | intergenic (+219/+5) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 375064 | NA (NA) | 6 (0.270) | 6/192 | 1.7 | NA | noncoding (33/34 nt) | other | REP31c |
| ? | NC_000913 | = 377487 | NA (NA) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 377353 = | NA (NA) | 16 (0.650) +30 bp |
9/216 | 1.3 | NA | noncoding (18/37 nt) | other | REP32a |
| ? | NC_000913 | 4325850 = | NA (NA) | intergenic (‑109/+549) | yjdN/yjdM | conserved protein YjdN/conserved protein YjdM | |||||
| * | ? | NC_000913 | 1207790 = | 27 (0.850) | 13 (0.470) | 12/244 | 1.1 | 34.3% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 26 (0.930) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 42 (1.370) | 36/268 | 0.0 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 50 (1.580) | 52 (1.660) | 38/274 | 0.0 | 67.7% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 0 (0.000) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 47 (1.490) | 34/276 | 0.1 | 94.0% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 3 (0.090) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | 4317966 = | NA (NA) | 3 (0.130) | 3/206 | 2.8 | NA | intergenic (‑71/+40) | phnL/phnK | methylphosphonate degradation complex subunit PhnL/carbon‑phosphorus lyase subunit PhnK |
| ? | NC_000913 | 4326285 = | NA (NA) | noncoding (34/34 nt) | other | REP325j | |||||
| * | ? | NC_000913 | 4373261 = | NA (NA) | 20 (0.770) | 10/226 | 1.2 | NA | intergenic (+99/+104) | yjeI/yjeJ | DUF4156 domain‑containing lipoprotein YjeI/protein YjeJ |
| ? | NC_000913 | 4374533 = | NA (NA) | intergenic (‑299/+96) | yjeJ/epmB | protein YjeJ/lysine 2,3‑aminomutase | |||||