| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 340115 | NA (NA) | 3 (0.120) | 3/216 | 2.9 | NA | noncoding (1/29 nt) | other | REPv23h |
| ? | NC_000913 | = 3269720 | NA (NA) | intergenic (+118/+496) | yhaC/rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component | |||||
GGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/339952‑340115‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggcctgataagcgtagcgcatcaggcaTTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATAGACTTTGTAAGAAGTTATTAAGTCTATATTGCATTTAAA < NC_000913/3269720‑3269587 GGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGC < 1:369234/140‑1 CGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGGACCCCTTATCCGGCCTACGAGTGGCGCGGGAATTGTAGGCCc > 2:525031/1‑139 CTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGT > 2:183353/1‑140 GCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATC > 2:141717/1‑140 CTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAG > 2:509165/1‑140 TACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGG < 1:196912/140‑1 ATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAG > 2:359672/1‑140 TTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTT < 1:359672/140‑1 tgcaagGAAATGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATAGACT < 1:388497/134‑1 ATAAGCGTAGCGCATCAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATAGACTTTGTAAGAA > 1:357607/1‑129 ATAAGCGTAGCGCATCAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATAGACTTTGTAAGAA < 2:357607/129‑1 GCGTAGCGCATCAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATAGACTTTGTAAGAAGTTATTAAGTCTATA < 1:383310/140‑1 CGTAGCGCATCAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATAGACTTTGTAAGAAGTTATTAAGTCTATAT < 1:323204/140‑1 TAGCGCATCAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATAGACTTTGTAAGAAGTTATTAAGTCTATATTG < 1:361095/140‑1 CGCATCAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATAGACTTTGTAAGAAGTTATTAAGTCTATATTGCAT > 1:487715/1‑140 CGCATCAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATAGACTTTGTAAGAAGTTAT > 1:484893/1‑124 CGCATCAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATAGACTTTGTAAGAAGTTAT < 2:484893/124‑1 TCAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATAGACTTTGTAAGAAGTTATTAAGTCTATATTGCATTTAA > 1:208493/1‑140 CAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATAGACTTTGTAAGAAGTTATTAAGTCTATATTGCATTTAAA > 2:8612/1‑140 CAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGGGCACAGGGGAAGATGAATAAATATCTACGGTATTAATAATAGACTTTGTAAGAAGTTATTAAGTCTATATTGCATTTAAA > 2:473952/1‑140 GGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/339952‑340115‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggcctgataagcgtagcgcatcaggcaTTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATAGACTTTGTAAGAAGTTATTAAGTCTATATTGCATTTAAA < NC_000913/3269720‑3269587 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |