| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 340115 | NA (NA) | 3 (0.120) | 3/216 | 2.9 | NA | noncoding (1/29 nt) | other | REPv23h |
| ? | NC_000913 | = 3269720 | NA (NA) | intergenic (+118/+496) | yhaC/rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component | |||||
AATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGTTGCCATTGGTGGCAACAGCATTATCAAAGATAACGCCAGCCAGTCGATTGAGCATCAGGCGGAGGCGGTG > NC_000913/339989‑340254 | aaTCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGt > 2:524642/1‑140 (MQ=255)aaTCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAAAGACTTATCCGGCCCACGGGTGGCCCCGGAATTGTAGGGCTGATAAGCGTGGCGCATCAGGCAGACTGGCGATggg > 2:201911/1‑139 (MQ=14) cTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCAt < 2:438689/140‑1 (MQ=255) tGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATa < 1:183353/140‑1 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATaa < 1:5069/140‑1 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTg > 1:31579/1‑122 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTg < 2:31579/122‑1 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCa < 1:525031/140‑1 (MQ=255) gATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCAt < 1:364197/130‑1 (MQ=255) gATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCAt > 2:364197/1‑130 (MQ=255) tAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGt > 1:449954/1‑140 (MQ=255) gcATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCg < 2:398690/140‑1 (MQ=255) aTCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttttgcggttgccatcagtttcaaacccgcgtcagtgag > 2:359672‑M1/1‑100 (MQ=255) tCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGAc > 2:297842/1‑140 (MQ=255) gCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATaa < 1:297842/140‑1 (MQ=255) ttGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttttgcggttgccatcagtttcaaacccgcgtcagtgagtttttgctt < 1:359672‑M1/140‑50 (MQ=255) aCCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATaacaa > 2:184170/1‑134 (MQ=255) aCCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATaacaa < 1:184170/134‑1 (MQ=255) ccATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCCGACATAACAACATGaaa > 2:484237/1‑140 (MQ=255) tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGc > 2:79099/1‑140 (MQ=255) gCCGGATGCGGCGTGAACACCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAAGCCTGATAAGCGGAGCGCATCAGGCAGTCTCGCGTTGGTCCTAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCt > 2:539235/1‑140 (MQ=25) gcgTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGtt > 1:176195/1‑140 (MQ=255) cgTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGTTg < 1:524642/140‑1 (MQ=255) cgTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGTTg < 2:449954/140‑1 (MQ=255) cgTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGTTg < 1:201911/140‑1 (MQ=255) ccTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGTTGCCATTGGTGGCAACAGCa < 1:79099/140‑1 (MQ=255) ccTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGTTGCCATTGGTGGCAACAGCa < 2:176195/140‑1 (MQ=255) ccTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGTTGCCATTGGTGGCAACAGCa < 1:509165/140‑1 (MQ=255) cTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGTTGCCATTGGTGGCAACAGCAt > 1:233901/1‑140 (MQ=255) cGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGTTGCCATTGGTGGCAACAGCATTAt > 1:237341/1‑140 (MQ=255) tgcaaggaaatgtaGGCCTGATAAGCGTAGCGCATCAGGCAtttttgcggttgccatcagtttcaaacccgcgtcagtgagtttttgcttttggtgcacagggtaagatgaataaatatctacggtattaataatagact < 1:388497‑M1/134‑100 (MQ=255) aaTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGTTGCCATTGGTGGCAACAGCATTATCAAAGATAACgcc < 2:237341/140‑1 (MQ=255) ggCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGTTGCCATTGGTGGCAACAGCATTATCAAAGATAACGCCAGCCAGt < 1:141717/140‑1 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGTTGCCATTGGTGGCAACAGCATTATCAAAGATAACGCCAGCCAGTCg > 1:441227/1‑140 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGTTGCCATTGGTGGCAACAGCATTATCAAAGATAACGCCAGCCAGTCGa > 2:442741/1‑140 (MQ=255) aTAAGCGTAGCGCATCAGGCAtttttgcggttgccatcagtttcaaacccgcgtcagtgagtttttgcttttggtgcacagggtaagatgaataaatatctacggtattaataatagactttgtaagaa < 2:357607‑M1/129‑109 (MQ=255) aTAAGCGTAGCGCATCAGGCAtttttgcggttgccatcagtttcaaacccgcgtcagtgagtttttgcttttggtgcacagggtaagatgaataaatatctacggtattaataatagactttgtaagaa > 1:357607‑M1/1‑21 (MQ=255) gCGTAGCGCATCAGGCAtttttgcggttgccatcagtttcaaacccgcgtcagtgagtttttgcttttggtgcacagggtaagatgaataaatatctacggtattaataatagactttgtaagaagttattaagtctata < 1:383310‑M1/140‑124 (MQ=255) cGTAGCGCATCAGGCAtttttgcggttgccatcagtttcaaacccgcgtcagtgagtttttgcttttggtgcacagggtaagatgaataaatatctacggtattaataatagactttgtaagaagttattaagtctatat < 1:323204‑M1/140‑125 (MQ=255) tAGCGCATCAGGCAtttttgcggttgccatcagtttcaaacccgcgtcagtgagtttttgcttttggtgcacagggtaagatgaataaatatctacggtattaataatagactttgtaagaagttattaagtctatattg < 1:361095‑M1/140‑127 (MQ=255) cgcATCAGGCAtttttgcggttgccatcagtttcaaacccgcgtcagtgagtttttgcttttggtgcacagggtaagatgaataaatatctacggtattaataatagactttgtaagaagttattaagtctatattgcat > 1:487715‑M1/1‑11 (MQ=255) cgcATCAGGCAtttttgcggttgccatcagtttcaaacccgcgtcagtgagtttttgcttttggtgcacagggtaagatgaataaatatctacggtattaataatagactttgtaagaagttat > 1:484893‑M1/1‑11 (MQ=255) cgcATCAGGCAtttttgcggttgccatcagtttcaaacccgcgtcagtgagtttttgcttttggtgcacagggtaagatgaataaatatctacggtattaataatagactttgtaagaagttat < 2:484893‑M1/124‑114 (MQ=255) cgcATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGTTGCCATTGGTGGCAACAGCATTATCAAAGATAACGCCAGCCAGTCGATTGAGCATCaggc > 1:489675/1‑140 (MQ=255) tCAGGCAtttttgcggttgccatcagtttcaaacccgcgtcagtgagtttttgcttttggtgcacagggtaagatgaataaatatctacggtattaataatagactttgtaagaagttattaagtctatattgcatttaa > 1:208493‑M1/1‑7 (MQ=255) cAGGCAtttttgcggttgccatcagtttcaaacccgcgtcagtgagtttttgcttttggtgcacagggtaagatgaataaatatctacggtattaataatagactttgtaagaagttattaagtctatattgcatttaaa > 2:8612‑M1/1‑6 (MQ=255) cAGGCAtttttgcggttgccatcagtttcaaacccgcgtcagtgagtttttgcttttggggcacaggggaagatgaataaatatctacggtattaataatagactttgtaagaagttattaagtctatattgcatttaaa > 2:473952‑M1/1‑6 (MQ=255) cAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGTTGCCATTGGTGGCAACAGCATTATCAAAGATAACGCCAGCCAGTCGATTGAGCATCaggcggagg < 2:289959/140‑1 (MQ=255) cAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGTTGCCATTGGTGGCAACAGCATTATCAAAGATAACGCCAGCCAGTCGATTGAGCATCaggcggagg > 2:149036/1‑140 (MQ=255) aGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGTTGCCATTGGTGGCAACAGCATTATCAAAGATAACGCCAGCCAGTCGATTGAGCATCaggcggaggc < 2:233901/140‑1 (MQ=255) aGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGTTGCCATTGGTGGCAACAGCATTATCAAAGATAACGCCAGCCAGTCGATTGAGCATCAGGCGGAGGCGGTg > 1:367537/1‑140 (MQ=255) | AATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAGCGGACATAACAACATGAAAGAGCTTGTGGTCGTTGCCATTGGTGGCAACAGCATTATCAAAGATAACGCCAGCCAGTCGATTGAGCATCAGGCGGAGGCGGTG > NC_000913/339989‑340254 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |