| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 377353 = | NA (NA) | 16 (0.650) +TTAGCGTCGCATCAGGCATCTGCGCACGAC |
9/216 | 1.3 | NA | noncoding (18/37 nt) | other | REP32a |
| ? | NC_000913 | 4325850 = | NA (NA) | intergenic (‑109/+549) | yjdN/yjdM | conserved protein YjdN/conserved protein YjdM | |||||
GCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGG > NC_000913/4325713‑4325989 | gCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGc < 2:59973/140‑1 (MQ=255) cAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCGGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGcc > 1:201902/1‑140 (MQ=255) cAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGcc > 1:7320/1‑140 (MQ=255) agcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcacacgacTGCCGGatgcgat > 2:418244‑M2/128‑138 (MQ=255) cgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcgcacgacTGCCGGATGCGGCGTgaa > 1:167463‑M2/123‑140 (MQ=255) ggCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATc > 2:454856/1‑140 (MQ=255) cgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgttagcgtcgcatcaggtatctgcgcacgacTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACg > 1:468126‑M2/105‑140 (MQ=255) cgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcgcacgacTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACg > 1:91009‑M2/105‑140 (MQ=255) cgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcgcacgacTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACg > 2:304432‑M2/105‑140 (MQ=255) gactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcgcacgacTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACgg > 1:355445‑M2/104‑140 (MQ=255) actgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcacacgacTGCCGGATGCG‑‑ATAAACGTCTTGTCCGgcctacatttc > 1:130689‑M2/103‑135 (MQ=255) aCCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAg > 2:388897/1‑140 (MQ=255) cggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgttagcgtcgcatcaggtatctgcgcacgacTGCCGGATGCGGCGTAAACGCCTTATCCGGCCtacggatggcg < 2:468126‑M2/43‑6 (MQ=255) cggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcgcacgacTGCCGGATGCGGCGTGAACGCCTTATCCGgcctacgggtggcg < 2:91009‑M2/43‑7 (MQ=255) cggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcgcacgacTGCCGGATGCGGCGTAAACGCCTTATCCGGCCtacggatggcg < 2:355445‑M2/43‑6 (MQ=255) gcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcgcacgacTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGa < 2:138950‑M2/48‑1 (MQ=255) gcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcgcacgacTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGa < 1:341908‑M2/48‑1 (MQ=255) aaGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGa < 2:223266/140‑1 (MQ=255) cgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcgcacgacTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAAttt > 2:420136‑M2/89‑140 (MQ=255) gtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcgcacgacTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTg < 1:254499‑M2/53‑1 (MQ=255) gtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcgcacgacTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTg < 1:304432‑M2/53‑1 (MQ=255) gtAGTTCGAAATTTATACAGATGAGAGG‑GGCCTGATAAGACGCGCGAGGGTCGCATCAGGCAGACGGTCCTGTTGCCGGATGCGGAGTAAACGCCTTATCCGACCTAAGTAGGGTGCGGGAATTTGTAGGACTGATAAGa < 2:489270/140‑1 (MQ=17) ccggtctacacttcgcccataaaccgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcgcacgacTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAg < 1:420136‑M2/66‑1 (MQ=255) cGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACgcgc > 1:450364/1‑140 (MQ=255) cGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACgcgc > 2:261538/1‑140 (MQ=255) tttATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCg < 2:43215/140‑1 (MQ=255) tttATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCg < 2:201902/140‑1 (MQ=255) ataCAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCg > 1:472816/1‑140 (MQ=255) aTGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAg < 2:238512/140‑1 (MQ=255) agagGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCg > 2:457011/1‑128 (MQ=40) agagGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCg < 1:457011/128‑1 (MQ=40) agGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGt < 1:388897/140‑1 (MQ=38) tGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCa < 1:454856/140‑1 (MQ=35) cgcgcgAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGGGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGa > 1:111197/1‑140 (MQ=37) cgAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATgcg > 2:468434/1‑140 (MQ=37) aTCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGc < 1:261538/140‑1 (MQ=35) tCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCgg < 2:111197/140‑1 (MQ=33) gCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt < 1:184305/140‑1 (MQ=32) tGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAgg > 2:209276/1‑140 (MQ=32) | GCAAAAGAGAGGTAGGGACTTAACGGCATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGG > NC_000913/4325713‑4325989 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |