Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 1 1
12 1 1
12 12 12

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 1129 1298
Multiple Base Substitutions 1 1
Deletions 97 192
Insertions 113 175
Mobile Element Insertions 2 13
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 1342 1679

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 136 0 55.1 1935284 95.6% 1850131 138.4
A2 F28 I1 R1 136 0 69.0 2332728 99.3% 2316398 138.9
A3 F28 I1 R1 159 0 86.7 3040088 95.7% 2909364 138.7
A4 F28 I1 R1 117 0 80.8 2798880 97.5% 2728908 138.6
A5 F28 I1 R1 139 0 68.5 2316674 99.3% 2300457 138.6
A6 F28 I1 R1 145 0 69.6 2346944 99.3% 2330515 138.7
A7 F28 I1 R1 114 0 64.8 2195608 99.1% 2175847 138.8
A8 F28 I1 R1 160 0 64.0 2174188 99.3% 2158968 138.6
A9 F28 I1 R1 145 0 83.4 2856846 99.4% 2839704 138.7
A10 F28 I1 R1 162 0 98.0 3324640 99.3% 3301367 138.4
A11 F28 I1 R1 150 0 82.6 2826056 99.3% 2806273 139.2
A12 F28 I1 R1 116 0 70.6 2404304 99.2% 2385069 138.7

Mutation Needle Plot

Mutation Targets

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