mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 69,561 | A→G | V163A (GTG→GCG) | araB ← | ribulokinase |
| RA | 80,258 | A→G | F203L (TTT→CTT) | leuC ← | 3‑isopropylmalate dehydratase subunit LeuC |
| RA | 128,019 | A→G | E36E (GAA→GAG) | lpd → | lipoamide dehydrogenase |
| RA | 128,203 | A→G | T98A (ACC→GCC) | lpd → | lipoamide dehydrogenase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 316,398 | A→G | H271R (CAC→CGC) | insF‑1 → | IS3 element protein InsF |
| RA | 327,781 | Δ1 bp | coding (953/1473 nt) | betB ← | betaine aldehyde dehydrogenase |
| RA | 332,895 | A→G | Q175Q (CAA→CAG) | pdeL → | DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| RA | 380,022 | (G)10→9 | intergenic (‑141/+47) | frmR ← / ← yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| RA | 427,568 | A→G | K94K (AAA→AAG) | yajC → | Sec translocon accessory complex subunit YajC |
| RA | 501,257 | T→C | V378A (GTA→GCA) | gsk → | inosine/guanosine kinase |
| RA | 527,577 | T→C | intergenic (+36/‑4) | rhsD → / → ybbC | protein RhsD/PF15631 family protein YbbC |
| RA | 727,043 | T→C | intergenic (‑7/+16) | kdpB ← / ← kdpA | K(+) transporting P‑type ATPase subunit KdpB/K(+) transporting P‑type ATPase subunit KdpA |
| RA | 734,682 | A→G | pseudogene (463/1434 nt) | ybfO → | conserved protein, rhs‑like YbfO |
| RA | 735,131 | G→A | pseudogene (912/1434 nt) | ybfO → | conserved protein, rhs‑like YbfO |
| RA | 759,856 | T→C | V384A (GTA→GCA) | sucA → | subunit of E1(0) component of 2‑oxoglutarate dehydrogenase |
| RA | 775,617 | C→T | A155A (GCC→GCT) | tolQ → | Tol‑Pal system protein TolQ |
| RA | 793,126 | T→C | E221E (GAA→GAG) | modF ← | ABC family protein ModF |
| RA | 798,196 | A→G | V79A (GTG→GCG) | ybhA ← | pyridoxal phosphate/fructose‑1,6‑bisphosphate phosphatase |
| RA | 832,676 | A→G | V92A (GTC→GCC) | ybiA ← | N‑glycosidase YbiA |
| RA | 839,586 | T→C | Q649R (CAG→CGG) | fiu ← | putative iron siderophore outer membrane transporter |
| RA | 843,979 | A→G | L501P (CTA→CCA) | ybiO ← | moderate conductance mechanosensitive channel |
| RA | 863,358 | G→A | L52L (CTG→TTG) | ybiY ← | putative pyruvate formate‑lyase activating enzyme YbiY |
| RA | 868,422 | (C)8→7 | coding (903/1872 nt) | gsiA → | glutathione ABC transporter ATP binding subunit GsiA |
| RA | 888,876 | A→G | V315A (GTA→GCA) | ybjL ← | putative transport protein YbjL |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 911,132 | A→G | intergenic (‑83/+50) | poxB ← / ← hcr | pyruvate oxidase/NADH oxidoreductase |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 969,920 | C→T | R178W (CGG→TGG) | ycaQ → | winged helix DNA‑binding domain‑containing protein YcaQ |
| RA | 972,057 | A→G | A102A (GCA→GCG) | ycbJ → | putative phosphotransferase YcbJ |
| RA | 1,010,898 | C→T | A312V (GCC→GTC) | uup → | ATP‑binding protein with possible role in replication |
| RA | 1,077,756 | C→T | R376H (CGC→CAC) | putA ← | fused DNA‑binding transcriptional repressor/proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase PutA |
| RA | 1,097,531 | (A)8→7 | intergenic (+702/+34) | ycdU → / ← serX | uncharacterized protein YcdU/tRNA‑Ser |
| RA | 1,114,758 | A→G | Y245H (TAT→CAT) | mdtG ← | efflux pump MdtG |
| RA | 1,127,027 | C→T | A74A (GCC→GCT) | yceM → | putative oxidoreductase YceM |
| RA | 1,136,183 | A→G | Y207C (TAC→TGC) | flgH → | flagellar L‑ring protein |
| RA | 1,138,609 | G→A | A78T (GCG→ACG) | flgK → | flagellar hook‑filament junction protein 1 |
| RA | 1,143,140 | T→C | T410A (ACT→GCT) | rne ← | ribonuclease E |
| RA | 1,220,971 | G→A | pseudogene (1371/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,266,725 | A→G | D211G (GAC→GGC) | prmC → | protein‑(glutamine‑N(5)) methyltransferase |
| RA | 1,270,109 | T→G | intergenic (+186/+129) | rdlB → / ← ldrC | small regulatory antisense RNA RdlB/small toxic polypeptide LdrC |
| RA | 1,270,545 | G→T | intergenic (+85/+204) | rdlC → / ← chaA | small regulatory antisense RNA RdlC/Na(+)/K(+):H(+) antiporter ChaA |
| RA | 1,270,583 | G→A | intergenic (+123/+166) | rdlC → / ← chaA | small regulatory antisense RNA RdlC/Na(+)/K(+):H(+) antiporter ChaA |
| RA | 1,318,571 | (C)6→7 | coding (1218/1362 nt) | trpC ← | fused indole‑3‑glycerol phosphate synthase/phosphoribosylanthranilate isomerase |
| RA | 1,366,662 | A→G | A371A (GCA→GCG) | puuE → | 4‑aminobutyrate aminotransferase PuuE |
| RA | 1,380,122 | A→G | T747A (ACC→GCC) | ycjT → | kojibiose phosphorylase |
| RA | 1,406,145 | T→C | I56T (ATC→ACC) | smrA → | DNA endonuclease SmrA |
| RA | 1,408,305 | A→G | T86A (ACG→GCG) | zntB → | Zn(2(+)):H(+) symporter |
| RA | 1,453,860 | T→C | intergenic (‑218/‑67) | paaZ ← / → paaA | oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase/phenylacetyl‑CoA 1,2‑epoxidase, monooxygenase subunit |
| RA | 1,456,070 | T→C | V49A (GTG→GCG) | paaD → | phenylacetate degradation protein |
| RA | 1,482,152 | T→C | V415A (GTG→GCG) | ynbD → | putative phosphatase |
| RA | 1,493,424 | C→T | Q319* (CAA→TAA) | trg → | methyl‑accepting chemotaxis protein Trg |
| RA | 1,510,051 | T→C | S17P (TCG→CCG) | ydcR → | fused putative DNA‑binding transcriptional regulator/putative aminotransferase YdcR |
| RA | 1,513,875 | T→C | G15G (GGT→GGC) | ydcU → | putative ABC transporter membrane subunit YdcU |
| RA | 1,541,351 | C→T | E414K (GAA→AAA) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,564,981 | T→C | E251E (GAA→GAG) | dosP ← | oxygen‑sensing c‑di‑GMP phosphodiesterase DosP |
| RA | 1,568,811 | A→G | S5P (TCC→CCC) | yddW ← | putative lipoprotein YddW |
| RA | 1,568,865 | A→G | intergenic (‑42/+89) | yddW ← / ← gadC | putative lipoprotein YddW/L‑glutamate:4‑aminobutyrate antiporter |
| RA | 1,585,936 | T→C | E184G (GAA→GGA) | ydeP ← | putative oxidoreductase YdeP |
| RA | 1,605,416 | G→A | E122E (GAG→GAA) | lsrB → | Autoinducer‑2 ABC transporter periplasmic binding protein |
| RA | 1,634,642 | C→T | G82S (GGC→AGC) | tfaQ ← | Qin prophage; putative tail fiber assembly protein TfaQ |
| RA | 1,685,542 | (C)6→5 | coding (1047/1404 nt) | fumC ← | fumarase C |
| RA | 1,703,904 | A→G | G135G (GGT→GGC) | ydgJ ← | putative oxidoreductase YdgJ |
| RA | 1,714,326 | (T)9→8 | intergenic (+55/‑51) | dtpA → / → gstA | dipeptide/tripeptide:H(+) symporter DtpA/glutathione S‑transferase GstA |
| RA | 1,720,255 | T→C | V127A (GTA→GCA) | slyB → | outer membrane lipoprotein SlyB |
| RA | 1,800,084 | T→C | intergenic (‑85/+12) | rpmI ← / ← infC | 50S ribosomal subunit protein L35/translation initiation factor IF‑3 |
| RA | 1,831,878 | A→T | D35E (GAT→GAA) | astC ← | succinylornithine transaminase |
| RA | 1,834,771 | T→C | V219A (GTT→GCT) | ydjY → | 4Fe‑4S ferredoxin‑type domain‑containing protein YdjY |
| RA | 1,873,384 | A→G | K448K (AAA→AAG) | dgcJ → | putative diguanylate cyclase DgcJ |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,903,091 | A→G | T4A (ACC→GCC) | manY → | mannose‑specific PTS enzyme IIC component |
| RA | 1,905,116 | A→G | I106V (ATT→GTT) | yobD → | conserved inner membrane protein YobD |
| RA | 1,923,432 | T→A | D92V (GAT→GTT) | yebY ← | DUF2511 domain‑containing protein YebY |
| RA | 1,933,615 | T→C | V330V (GTA→GTG) | edd ← | phosphogluconate dehydratase |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,033,994 | (T)8→9 | intergenic (+255/‑57) | rseX → / → yedS | small regulatory RNA RseX/putative outer membrane protein YedS, N‑terminal fragment |
| RA | 2,041,357 | A→G | intergenic (+239/‑18) | msrQ → / → zinT | periplasmic protein‑L‑methionine sulfoxide reductase heme binding subunit/metal‑binding protein ZinT |
| RA | 2,145,623 | T→C | S786S (AGT→AGC) | dgcE → | putative diguanylate cyclase DgcE |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,195,760 | G→A | V487V (GTG→GTA) | metG → | methionine‑‑tRNA ligase |
| RA | 2,288,561 | (C)7→6 | pseudogene (354/2525 nt) | yejO ← | adhesin‑like autotransporter YejO |
| RA | 2,296,418 | T→C | T203A (ACC→GCC) | ccmB ← | heme trafficking system membrane protein CcmB |
| RA | 2,304,981 | +C | intergenic (+588/+127) | eco → / ← mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| RA | 2,377,184 | T→C | T137A (ACA→GCA) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
| RA | 2,446,579 | T→C | T299A (ACC→GCC) | aroC ← | chorismate synthase |
| RA | 2,507,458 | T→C | N146S (AAC→AGC) | fryC ← | putative PTS enzyme IIC component FryC |
| RA | 2,527,823 | T→C | V293A (GTG→GCG) | yfeH → | putative solute:Na(+) symporter |
| RA | 2,538,274 | A→G | T176A (ACT→GCT) | yfeS → | conserved protein YfeS |
| RA | 2,553,560 | (T)6→5 | coding (336/900 nt) | hemF → | coproporphyrinogen III oxidase |
| RA | 2,559,890 | T→C | S345P (TCA→CCA) | intZ → | CPZ‑55 prophage; putative phage integrase IntZ |
| RA | 2,596,660 | A→G | G26G (GGT→GGC) | ypfJ ← | uncharacterized protein YpfJ |
| RA | 2,602,017 | (C)7→8 | coding (200/2019 nt) | hyfB → | hydrogenase 4 component B |
| JC | 2,734,543 | (C)8→11 | coding (492/732 nt) | pgeF ← | polyphenol oxidase YfiH |
| RA | 2,770,027 | T→C | S109P (TCT→CCT) | yfjR → | CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
| RA | 2,773,481 | A→G | E55G (GAA→GGA) | yfjW → | CP4‑57 prophage; uncharacterized protein YfjW |
| RA | 2,798,184 | A→G | G104G (GGT→GGC) | stpA ← | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| RA | 2,811,134 | A→G | H122R (CAC→CGC) | mprA → | DNA‑binding transcriptional repressor MprA |
| RA | 2,819,064 | T→C | N28S (AAC→AGC) | csrA ← | carbon storage regulator |
| MC JC | 2,857,096 | Δ2,538 bp | coding (4‑2541/2562 nt) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,875,459 | C→T | G291R (GGG→AGG) | cysD ← | sulfate adenylyltransferase subunit 2 |
| RA | 2,895,366 | T→C | Q138Q (CAA→CAG) | ygcQ ← | putative flavoprotein |
| RA | 2,949,993 | (T)5→6 | coding (752/1332 nt) | argA → | N‑acetylglutamate synthase |
| RA | 2,972,909 | (C)6→7 | coding (954/1194 nt) | lplT ← | lysophospholipid transporter |
| RA | 2,983,384 | A→G | G247G (GGT→GGC) | kduI ← | 5‑dehydro‑4‑deoxy‑D‑glucuronate isomerase |
| RA | 2,998,609 | G→A | H74Y (CAC→TAC) | ygeQ ← | protein YgeQ |
| RA | 3,030,784 | C→T | A50T (GCT→ACT) | ygfT ← | fused putative oxidoreductase, Fe‑S subunit and nucleotide‑binding subunit |
| RA | 3,060,772 | (T)8→7 | intergenic (+126/‑78) | argP → / → scpA | DNA‑binding transcriptional dual regulator ArgP/methylmalonyl‑CoA mutase |
| RA | 3,068,157 | T→C | intergenic (‑77/+16) | yggE ← / ← argO | uncharacterized protein YggE/L‑arginine exporter |
| RA | 3,123,295 | G→A | R171W (CGG→TGG) | glcB ← | malate synthase G |
| RA | 3,142,370 | A→G | L207P (CTG→CCG) | hybC ← | hydrogenase 2 large subunit |
| RA | 3,162,665 | G→A | S2L (TCA→TTA) | ftsP ← | cell division protein required during stress conditions |
| RA | 3,218,001 | T→C | N359S (AAC→AGC) | aer ← | aerotaxis sensor receptor, flavoprotein |
| RA | 3,230,481 | A→G | I532V (ATC→GTC) | ygjK → | glycoside hydrolase |
| RA | 3,236,458 | A→G | I167V (ATC→GTC) | ygjP → | putative metal‑dependent hydrolase |
| RA | 3,246,291 | T→C | R356R (CGT→CGC) | exuT → | hexuronate transporter |
| RA | 3,250,041 | T→C | L120S (TTA→TCA) | yqjE → | conserved inner membrane protein YqjE |
| RA | 3,253,216 | T→C | G102G (GGT→GGC) | yhaI → | putative inner membrane protein |
| RA | 3,254,126 | T→C | E30G (GAG→GGG) | yhaJ ← | DNA‑binding transcriptional activator YhaJ |
| RA | 3,267,471 | A→G | N31S (AAC→AGC) | tdcR → | DNA‑binding transcriptional activator TdcR |
| RA | 3,280,494 | T→C | V93A (GTG→GCG) | agaV → | N‑acetyl‑D‑galactosamine specific PTS enzyme IIB component |
| RA | 3,283,780 | T→C | V213A (GTT→GCT) | kbaY → | tagatose‑1,6‑bisphosphate aldolase 1 subunit KbaY |
| RA | 3,292,429 | G→A | R363R (CGG→CGA) | yraK → | putative fimbrial adhesin YraK |
| RA | 3,304,813 | (C)7→8 | coding (1005/1245 nt) | mtr ← | tryptophan:H(+) symporter Mtr |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,362,022 | T→C | intergenic (+82/‑90) | gltF → / → yhcA | periplasmic protein GltF/putative fimbrial chaperone YhcA |
| RA | 3,388,726 | A→G | V134A (GTT→GCT) | aaeA ← | aromatic carboxylic acid efflux pump membrane fusion protein |
| RA | 3,407,054 | T→C | Y380H (TAC→CAC) | accC → | biotin carboxylase |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,605,181 | T→C | V68A (GTA→GCA) | yhhL → | DUF1145 domain‑containing protein YhhL |
| RA | 3,619,269 | A→G | V26V (GTA→GTG) | rhsB → | rhs element protein RhsB |
| RA | 3,619,272 | T→C | R27R (CGT→CGC) | rhsB → | rhs element protein RhsB |
| RA | 3,627,563 | A→T | I659N (ATC→AAC) | rbbA ← | ribosome‑associated ATPase |
| RA | 3,668,544 | (C)6→7 | coding (645/1398 nt) | ccp ← | cytochrome c peroxidase |
| RA | 3,728,170 | T→C | Y401C (TAC→TGC) | xylB ← | xylulokinase |
| RA | 3,744,307 | A→G | intergenic (+97/‑21) | yiaL → / → yiaM | DUF386 domain‑containing protein YiaL/2,3‑diketo‑L‑gulonate:Na(+) symporter ‑ membrane subunit |
| RA | 3,772,322 | T→C | R14R (CGT→CGC) | mtlA → | mannitol‑specific PTS enzyme IICBA component |
| RA | 3,794,733 | T→C | A249A (GCT→GCC) | rfaD → | ADP‑L‑glycero‑D‑mannoheptose 6‑epimerase |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,858,049 | T→C | D119G (GAC→GGC) | yidJ ← | putative sulfatase/phosphatase |
| RA | 3,860,630 | (C)5→4 | coding (348/894 nt) | yidL → | putative DNA‑binding transcriptional regulator YidL |
| RA | 3,931,183 | (G)7→8 | intergenic (‑90/‑133) | ravA ← / → kup | regulatory ATPase RavA/K(+):H(+) symporter Kup |
| RA | 3,980,280 | A→G | T109A (ACG→GCG) | rffM → | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase |
| RA | 4,013,467 | A→G | T139A (ACC→GCC) | metE → | cobalamin‑independent homocysteine transmethylase |
| RA | 4,023,449 | T→C | G238G (GGT→GGC) | tatC → | twin arginine protein translocation system ‑ TatC protein |
| RA | 4,168,571 | G→A | intergenic (+124/‑70) | gltT → / → rrlB | tRNA‑Glu/23S ribosomal RNA |
| RA | 4,200,155 | (C)6→7 | intergenic (+61/‑126) | yjaG → / → hupA | conserved protein YjaG/DNA‑binding protein HU‑alpha |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,393,067 | T→C | H334R (CAC→CGC) | queG ← | epoxyqueuosine reductase |
| RA | 4,410,053 | (T)9→8 | intergenic (+47/‑80) | rlmB → / → yjfI | 23S rRNA 2'‑O‑ribose G2251 methyltransferase/conserved protein YjfI |
| RA | 4,432,986 | A→T | I24N (ATC→AAC) | ytfF ← | inner membrane protein YtfF |
| RA | 4,445,549 | A→G | T480A (ACC→GCC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,465,588 | A→G | V198A (GTT→GCT) | treB ← | trehalose‑specific PTS enzyme IIBC component |
| RA | 4,466,090 | T→C | T31A (ACT→GCT) | treB ← | trehalose‑specific PTS enzyme IIBC component |
| RA | 4,472,777 | A→G | intergenic (‑244/+37) | pyrL ← / ← yjgH | pyrBI operon leader peptide/RutC family protein YjgH |
| RA | 4,490,708 | C→G | P144P (CCG→CCC) | idnR ← | DNA‑binding transcriptional dual regulator IdnR |
| RA | 4,519,416 | C→T | L303L (CTG→CTA) | yjhU ← | KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU |
| RA | 4,531,914 | A→G | intergenic (‑263/+523) | sgcX ← / ← yjhP | KpLE2 phage‑like element; putative endoglucanase with Zn‑dependent exopeptidase domain/KpLE2 phage‑like element; putative methyltransferase YjhP |
| RA | 4,548,170 | A→G | K143K (AAA→AAG) | fimF → | type 1 fimbriae minor subunit FimF |
| RA | 4,606,094 | (G)8→9 | noncoding (72/87 nt) | leuV ← | tRNA‑Leu |
| RA | 4,606,215 | (G)8→7 | noncoding (72/87 nt) | leuP ← | tRNA‑Leu |
| RA | 4,606,330 | (G)8→9 | noncoding (72/87 nt) | leuQ ← | tRNA‑Leu |
| RA | 4,623,776 | G→A | V114V (GTC→GTT) | lplA ← | lipoate‑‑protein ligase A |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 225610–225723 | 225896–225737 | 15–287 | 31 [29] | [27] 41 | [rrlH] | [rrlH] |
| * | * | ÷ | NC_000913 | 226149–226299 | 228909–228689 | 2391–2761 | 32 [28] | [29] 31 | [rrlH]–rrfH | [rrlH],rrfH |
| * | * | ÷ | NC_000913 | 731807 | 732200–731992 | 186–394 | 34 [27] | [28] 30 | rhsC | rhs element protein RhsC |
| * | * | ÷ | NC_000913 | 732687–732809 | 734586–734476 | 1668–1900 | 30 [29] | [29] 30 | [rhsC]–[ybfO] | [rhsC],ybfB,[ybfO] |
| * | * | ÷ | NC_000913 | 734721–734826 | 734989–734945 | 120–269 | 31 [28] | [29] 31 | ybfO | conserved protein, rhs‑like YbfO |
| * | * | ÷ | NC_000913 | 1269479–1269543 | 1269664–1269555 | 13–186 | 30 [29] | [29] 30 | rdlA/ldrB | putative antisense RNA regulator of LdrA/small toxic polypeptide LdrB |
| * | * | ÷ | NC_000913 | 1270203–1270390 | 1270526–1270493 | 104–324 | 31 [26] | [28] 34 | ldrC–rdlC | ldrC,rdlC |
| * | * | ÷ | NC_000913 | 2726132–2729247 | 2730846–2729567 | 321–4715 | 30 [29] | [29] 34 | [rrfG]–[rrsG] | [rrfG],rrlG,gltW,[rrsG] |
| * | * | ÷ | NC_000913 | 3423733–3424234 | 3424526–3424238 | 5–794 | 30 [29] | [26] 31 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 113 (1.190) | 66/266 | 0.1 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3214947 = | 30 (0.310) | 35 (0.360) | 26/270 | 2.4 | 54.2% | intergenic (+59/+20) | rpoD/mug | RNA polymerase, sigma 70 (sigma D) factor/stationary phase mismatch/uracil DNA glycosylase |
| ? | NC_000913 | 4502090 = | NA (NA) | noncoding (1426/1426 nt) | IS4 | repeat region | |||||
| * | ? | NC_000913 | = 3214959 | NA (NA) | 63 (0.640) | 36/274 | 1.4 | NA | intergenic (+71/+8) | rpoD/mug | RNA polymerase, sigma 70 (sigma D) factor/stationary phase mismatch/uracil DNA glycosylase |
| ? | NC_000913 | = 4503515 | NA (NA) | noncoding (1/1426 nt) | IS4 | repeat region | |||||
| * | ? | NC_000913 | 3363001 = | 134 (1.370) | 155 (1.600) | 65/272 | 0.2 | 69.8% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 1 (0.010) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 114 (1.170) | 68/274 | 0.1 | 95.8% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 5 (0.050) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||