BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,200,155	(C)_6→7	intergenic (+61/‑126)	yjaG → / → hupA	conserved protein YjaG/DNA‑binding protein HU‑alpha

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,200,149	1	.	C	100.0%	432.4 / NA	122	intergenic (+55/‑132)	yjaG/hupA	conserved protein YjaG/DNA‑binding protein HU‑alpha
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (61/61); total (61/61)

Only 100 of 139 total aligned reads displayed.

ACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTT  >  NC_000913/4200010‑4200280

aCGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCg                                                                                                                                      >  1:490327/1‑140 (MQ=255)

 cgcgATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑c                                                                                                                                    >  2:1184108/1‑140 (MQ=255)

  gcgATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTAAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑cc                                                                                                                                   >  1:595050/1‑140 (MQ=255)

    gATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑cccc                                                                                                                                 <  1:1407911/140‑1 (MQ=255)

         cGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGTAGTCTTCCCTTTCG‑cccccccgt                                                                                                                            <  2:218524/140‑4 (MQ=255)

         cGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑cccccccgt                                                                                                                            >  1:109574/1‑137 (MQ=255)

          gAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑cccccccgtc                                                                                                                           <  1:276248/140‑5 (MQ=255)

           aGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑cccccccgt                                                                                                                            <  1:1170241/138‑4 (MQ=255)

             cTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTgg                                                                                                                         <  1:750582/140‑1 (MQ=255)

             cTGATAAAAAGCCGTAGGGCTGGCTAGCGTGGGGCGGGGGCGGCAAATACTTGTATCATTTATCCACAATACGCTCAGGAAACGGGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTgg                                                                                                                         >  2:1073671/1‑140 (MQ=255)

              tGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAGGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGt                                                                                                                        <  1:1579773/140‑1 (MQ=255)

              tGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGt                                                                                                                        <  1:1033075/140‑1 (MQ=255)

               gATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTc                                                                                                                       <  2:43702/140‑1 (MQ=255)

                     aGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACAtt                                                                                                                 >  2:1246695/1‑140 (MQ=255)

                          ttAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTgg                                                                                                                         <  1:889328/127‑1 (MQ=255)

                          ttAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTgggg                                                                                                            >  2:1595122/1‑140 (MQ=255)

                          ttAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTgggg                                                                                                            >  1:1214410/1‑140 (MQ=255)

                           tAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTggggg                                                                                                           >  2:560784/1‑140 (MQ=255)

                                  gACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaa                                                                                                    >  1:832256/1‑140 (MQ=255)

                                  gACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaa                                                                                                    >  2:169206/1‑140 (MQ=255)

                                   aCCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaa                                                                                                   >  1:994585/1‑140 (MQ=255)

                                    ccTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaaa                                                                                                  >  2:1235115/1‑140 (MQ=255)

                                      tGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAg                                                                                                >  1:1096254/1‑140 (MQ=255)

                                       gCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGt                                                                                               <  1:1246695/140‑1 (MQ=255)

                                        cGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTg                                                                                              >  2:873329/1‑140 (MQ=255)

                                          tGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGc                                                                                            >  2:521288/1‑140 (MQ=255)

                                             ggCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTAt                                                                                         >  2:758500/1‑140 (MQ=255)

                                               cGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTAt                                                                                         <  2:1074595/138‑1 (MQ=255)

                                               cGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTAt                                                                                         >  1:1074595/1‑138 (MQ=255)

                                                gggTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCgg                                                                                      <  1:27711/140‑1 (MQ=255)

                                                gggTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCgg                                                                                      <  2:1211563/140‑1 (MQ=255)

                                                 ggTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGt                                                                                     <  1:1181695/140‑1 (MQ=255)

                                                   tGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc                                                                                   <  1:169206/140‑1 (MQ=255)

                                                     agagCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTCCCTGGAGTCTTCCCTTTCGCCCCCCCATCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgt                                                                                 <  1:1554903/140‑1 (MQ=255)

                                                     agagCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgt                                                                                 <  1:1518888/140‑1 (MQ=255)

                                                     agagCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgt                                                                                 <  1:1235115/140‑1 (MQ=255)

                                                       agCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgt                                                                                 <  1:944394/138‑1 (MQ=255)

                                                            tatTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGGTATCGGTGCGTGTATGCa                                                                          >  1:893758/1‑140 (MQ=255)

                                                            tatTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCgg                                                                                      >  2:926378/1‑128 (MQ=255)

                                                            tatTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCgg                                                                                      >  1:589095/1‑128 (MQ=255)

                                                            tatTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCgg                                                                                      <  2:589095/128‑1 (MQ=255)

                                                            tatTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgt                                                                                 <  1:531497/133‑1 (MQ=255)

                                                            tatTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCa                                                                          >  2:523291/1‑140 (MQ=255)

                                                            tatTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCa                                                                          >  1:959293/1‑140 (MQ=255)

                                                             atTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAg                                                                         <  2:1480664/140‑1 (MQ=255)

                                                               tGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGga                                                                       <  2:1276306/140‑1 (MQ=255)

                                                               tGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTCCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGga                                                                       <  1:511920/140‑1 (MQ=255)

                                                                 gTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgaga                                                                     >  2:871957/1‑140 (MQ=255)

                                                                 gTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGgaga                                                                     >  2:333083/1‑140 (MQ=255)

                                                                    taATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTg                                                                  >  2:547426/1‑140 (MQ=255)

                                                                      aTTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCt                                                                >  2:889851/1‑140 (MQ=255)

                                                                      aTTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCt                                                                >  2:731185/1‑140 (MQ=255)

                                                                      aTTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCt                                                                >  2:595593/1‑140 (MQ=255)

                                                                      aTTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCt                                                                >  2:1426413/1‑140 (MQ=255)

                                                                           tCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCt                                                           >  1:708184/1‑140 (MQ=255)

                                                                           tCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCt                                                           >  1:1385171/1‑140 (MQ=255)

                                                                            cAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTg                                                          >  2:686877/1‑140 (MQ=255)

                                                                            cAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTg                                                          >  1:1463477/1‑140 (MQ=255)

                                                                                  tAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCAttt                                                    <  1:758500/140‑1 (MQ=255)

                                                                                      aCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGt                                                <  2:959293/140‑1 (MQ=255)

                                                                                       ccAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTc                                               <  1:411925/140‑1 (MQ=255)

                                                                                       ccAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTc                                               >  2:1554384/1‑140 (MQ=255)

                                                                                         aGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGc                                             >  1:299271/1‑140 (MQ=255)

                                                                                          gAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCAttt                                                    >  1:587469/1‑132 (MQ=255)

                                                                                           aaaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAc                                           <  2:109574/140‑1 (MQ=255)

                                                                                           aaaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCAc                                           >  2:1537261/1‑140 (MQ=255)

                                                                                            aaaCGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACt                                          <  1:523291/140‑1 (MQ=255)

                                                                                               cGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGa                                       >  1:208873/1‑140 (MQ=255)

                                                                                                gTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGTAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt                                      >  1:165537/1‑140 (MQ=255)

                                                                                                gTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGAt                                      <  2:497965/140‑1 (MQ=255)

                                                                                                  gATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACt                                          <  1:125558/134‑1 (MQ=255)

                                                                                                       aaCGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGc                               <  2:261962/140‑1 (MQ=255)

                                                                                                       aaCGCCTGATTTGTCGTACCTGGAGTCTTCCATTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGATGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGc                               <  1:1073671/140‑1 (MQ=255)

                                                                                                        aCGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCa                              <  1:817087/140‑1 (MQ=255)

                                                                                                         cGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCaa                             <  1:1233092/140‑1 (MQ=255)

                                                                                                         cGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCaa                             <  2:208873/140‑1 (MQ=255)

                                                                                                         cGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCaa                             <  1:39570/140‑1 (MQ=255)

                                                                                                         cGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCaa                             >  2:956840/1‑140 (MQ=255)

                                                                                                         cGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCaa                             >  1:437270/1‑140 (MQ=255)

                                                                                                             tGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGa                         <  2:832256/140‑1 (MQ=255)

                                                                                                              gATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGAt                        <  1:686877/140‑1 (MQ=255)

                                                                                                                 ttGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATaaa                     <  1:1494250/140‑1 (MQ=255)

                                                                                                                         ccTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCaa                             >  1:223036/1‑124 (MQ=255)

                                                                                                                         ccTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCaa                             <  2:223036/124‑1 (MQ=255)

                                                                                                                         ccTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATaaa                     <  1:1150186/132‑1 (MQ=255)

                                                                                                                         ccTGGAGTCTTCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATaaa                     >  2:1150186/1‑132 (MQ=255)

                                                                                                                                  ttCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACAtt               <  2:1305135/129‑1 (MQ=255)

                                                                                                                                  ttCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACAtt               >  1:1305135/1‑129 (MQ=255)

                                                                                                                                  ttCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGAt       <  2:417936/137‑1 (MQ=255)

                                                                                                                                  ttCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGAt       >  2:1609987/1‑137 (MQ=255)

                                                                                                                                  ttCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGAt       <  1:1609987/137‑1 (MQ=255)

                                                                                                                                  ttCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGAt       <  2:1155048/137‑1 (MQ=255)

                                                                                                                                  ttCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAAc    >  2:900786/1‑140 (MQ=255)

                                                                                                                                  ttCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAAc    >  2:1224594/1‑140 (MQ=255)

                                                                                                                                  ttCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAAc    >  2:126343/1‑140 (MQ=255)

                                                                                                                                  ttCCCTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAAc    >  1:700643/1‑140 (MQ=255)

                                                                                                                                    cccTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGAt       <  2:151247/135‑1 (MQ=255)

                                                                                                                                    cccTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACtt  >  2:803399/1‑140 (MQ=255)

                                                                                                                                    cccTTTCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACtt  <  2:59336/140‑1 (MQ=255)

                                                                                                                                       tttCGCCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGAt       >  1:738008/1‑132 (MQ=255)

ACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCG‑CCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTT  >  NC_000913/4200010‑4200280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`