BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,819,064	T→C	N28S (AAC→AGC)	csrA ←	carbon storage regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,819,064	0	T	C	100.0%	416.2 / NA	116	N28S (AAC→AGC)	csrA	carbon storage regulator
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (57/59); total (57/59)

Only 100 of 117 total aligned reads displayed.

TGCGTCTCACCGATAAAGATGAGACGCGGAAAGATTAGTAACTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTAT  >  NC_000913/2818927‑2819200

tGCGTCTCACCGATAAAGATGAGACGCGGAAAGATTAGTAACTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTg                                                                                                                                        >  1:234110/1‑140 (MQ=255)

               aaGATGAGACGCGGAAAGATTAGTAACTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTaaa                                                                                                                         >  2:616681/1‑140 (MQ=255)

                   tGAGACGCGGAAAGATTAGTAACTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTg                                                                                                                     <  2:1231201/140‑1 (MQ=255)

                     agaCGCGGAAAGATTAGTAACTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTc                                                                                                                   <  1:1507028/140‑1 (MQ=255)

                       aCGCGGAAAGATTAGTAACTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCAc                                                                                                                 >  2:1062393/1‑140 (MQ=255)

                          cgGAAAGATTAGTAACTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGt                                                                                                              <  2:297877/140‑1 (MQ=255)

                           ggAAAGATTAGTAACTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTg                                                                                                             <  1:834703/140‑1 (MQ=255)

                           ggAAAGATTAGTAACTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTg                                                                                                             >  1:1660857/1‑140 (MQ=255)

                            gAAAGATTAGTAACTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGa                                                                                                            >  2:1471735/1‑140 (MQ=255)

                             aaaGATTAGTAACTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGAc                                                                                                           <  2:1035128/140‑1 (MQ=255)

                             aaaGATTAGTAACTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGAc                                                                                                           <  2:745177/140‑1 (MQ=255)

                             aaaGATTAGTAACTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGAc                                                                                                           <  2:559766/140‑1 (MQ=255)

                              aaGATTAGTAACTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGAcc                                                                                                          <  2:1331789/140‑1 (MQ=255)

                                gATTAGTAACTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTc                                                                                                        <  1:614955/140‑1 (MQ=255)

                                    aGTAACTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATcc                                                                                                    <  1:1062393/140‑1 (MQ=255)

                                    aGTAACTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATcc                                                                                                    <  1:616681/140‑1 (MQ=255)

                                     gTAACTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATccc                                                                                                   <  2:1167456/140‑1 (MQ=255)

                                       aaCTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCa                                                                                                 >  2:920507/1‑140 (MQ=255)

                                          tGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATc                                                                                              >  1:1641848/1‑140 (MQ=255)

                                           ggACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGAc                                                                                                           >  2:5164/1‑126 (MQ=255)

                                           ggACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGAc                                                                                                           <  1:5164/126‑1 (MQ=255)

                                           ggACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGAc                                                                                                           <  1:495335/126‑1 (MQ=255)

                                           ggACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCAt                                                                                                      >  1:1120696/1‑131 (MQ=255)

                                           ggACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCa                                                                                             >  2:1047432/1‑140 (MQ=255)

                                           ggACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCa                                                                                             >  1:1398741/1‑140 (MQ=255)

                                              ctgctgGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATccc                                                                                                   <  1:1373659/131‑1 (MQ=255)

                                              ctgctgGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATccc                                                                                                   >  2:1373659/1‑131 (MQ=255)

                                               tgctgGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAg                                                                                         >  2:371041/1‑140 (MQ=255)

                                                gctgGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAgg                                                                                        >  1:1307156/1‑140 (MQ=255)

                                                 ctgGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATACCCAATCATGAggg                                                                                       >  2:1363481/1‑140 (MQ=255)

                                                  tgGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGt                                                                                      >  1:1631466/1‑140 (MQ=255)

                                                      aTTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCa                                                                                  <  2:172871/140‑1 (MQ=255)

                                                               ccTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTcga                                                                         >  1:959651/1‑140 (MQ=255)

                                                               ccTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTcga                                                                         <  1:371041/140‑1 (MQ=255)

                                                                cTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTcgac                                                                        <  2:1660857/140‑1 (MQ=255)

                                                                    aTACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGt                                                                    <  1:406693/140‑1 (MQ=255)

                                                                       cGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAg                                                                 <  2:200067/140‑1 (MQ=255)

                                                                       cGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAg                                                                 <  2:1398741/140‑1 (MQ=255)

                                                                            gTAGATCTCTTCACGGTCAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCa                                                            >  2:285965/1‑140 (MQ=255)

                                                                             tAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAg                                                           >  1:211321/1‑140 (MQ=255)

                                                                             tAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAg                                                           >  1:981411/1‑140 (MQ=255)

                                                                                  ctctTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTc                                                      >  1:1285245/1‑140 (MQ=255)

                                                                                  ctctTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTc                                                      >  1:527454/1‑140 (MQ=255)

                                                                                      tCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGt                                                                    <  2:219282/122‑1 (MQ=255)

                                                                                      tCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTg                                                  >  1:800865/1‑140 (MQ=255)

                                                                                      tCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTg                                                  >  2:1220901/1‑140 (MQ=255)

                                                                                      tCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTg                                                  <  2:527454/140‑1 (MQ=255)

                                                                                      tCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTg                                                  >  1:1004851/1‑140 (MQ=255)

                                                                                      tCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTg                                                  >  2:1120255/1‑140 (MQ=255)

                                                                                          ggTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATc                                                             >  1:644592/1‑125 (MQ=255)

                                                                                          ggTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATc                                                             <  2:644592/125‑1 (MQ=255)

                                                                                          ggTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTcc                                              >  1:77644/1‑140 (MQ=255)

                                                                                          ggTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTcc                                              >  1:725946/1‑140 (MQ=255)

                                                                                            tGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCtt                                            >  1:1208194/1‑140 (MQ=255)

                                                                                            tGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCtt                                            >  1:1294473/1‑140 (MQ=255)

                                                                                              aaCAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGa                                          >  2:1314845/1‑140 (MQ=255)

                                                                                              aaCAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGa                                          <  2:1631466/140‑1 (MQ=255)

                                                                                              aaCAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGa                                          <  2:981411/140‑1 (MQ=255)

                                                                                              aaCAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGa                                          >  2:1137641/1‑140 (MQ=255)

                                                                                              aaCAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGa                                          >  1:1388540/1‑140 (MQ=255)

                                                                                              aaCAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGa                                          <  2:77644/140‑1 (MQ=255)

                                                                                              aaCAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGa                                          >  1:1566764/1‑140 (MQ=255)

                                                                                              aaCAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGa                                          <  1:285965/140‑1 (MQ=255)

                                                                                               aCAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGaa                                         >  1:874910/1‑140 (MQ=255)

                                                                                               aCAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGaa                                         >  2:1424625/1‑140 (MQ=255)

                                                                                               aCAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGaa                                         >  1:1583788/1‑140 (MQ=255)

                                                                                                      cttccttcGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTaa                                  >  2:123700/1‑140 (MQ=255)

                                                                                                        tccttcGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTaaaa                                >  2:662343/1‑140 (MQ=255)

                                                                                                        tccttcGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTaaaa                                >  2:932915/1‑140 (MQ=255)

                                                                                                        tccttcGGGGCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTaaaa                                >  2:459390/1‑140 (MQ=255)

                                                                                                                ggCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCggg                        <  1:919360/140‑1 (MQ=255)

                                                                                                                ggCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCggg                        <  2:905502/140‑1 (MQ=255)

                                                                                                                ggCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCggg                        <  2:1583788/140‑1 (MQ=255)

                                                                                                                 gCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGt                       <  1:1137641/140‑1 (MQ=255)

                                                                                                                 gCATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGt                       <  1:920507/140‑1 (MQ=255)

                                                                                                                  cATTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGtc                      <  2:1592382/140‑1 (MQ=255)

                                                                                                                   aTTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGtct                     <  2:959651/140‑1 (MQ=255)

                                                                                                                   aTTTACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGtct                     <  2:211321/140‑1 (MQ=255)

                                                                                                                      tACGCCAATACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGtctctc                  <  2:1307156/140‑1 (MQ=255)

                                                                                                                            aaTACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCggg                        >  1:27012/1‑128 (MQ=255)

                                                                                                                            aaTACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCggg                        <  2:27012/128‑1 (MQ=255)

                                                                                                                            aaTACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATc            <  1:1631962/140‑1 (MQ=255)

                                                                                                                            aaTACGTACCTGGCTGCCCTTTACCCCTAAAACTGGCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATc            <  1:200982/140‑1 (MQ=255)

                                                                                                                             aTACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGt                       >  2:1072557/1‑128 (MQ=255)

                                                                                                                             aTACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGt                       <  1:1072557/128‑1 (MQ=255)

                                                                                                                             aTACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATcc           <  2:1294473/140‑1 (MQ=255)

                                                                                                                              tACGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATccc          >  1:776616/1‑140 (MQ=255)

                                                                                                                               aCGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCg         <  2:1641848/140‑1 (MQ=255)

                                                                                                                                cGTACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCgg        <  1:993300/140‑1 (MQ=255)

                                                                                                                                  tACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCa      <  2:800865/140‑1 (MQ=255)

                                                                                                                                  tACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCa      <  1:1314845/140‑1 (MQ=255)

                                                                                                                                  tACCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCa      <  2:936948/140‑1 (MQ=255)

                                                                                                                                   aCCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCa      <  1:1035604/139‑1 (MQ=255)

                                                                                                                                   aCCTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCAt     >  1:438762/1‑140 (MQ=255)

                                                                                                                                    ccTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCAtt    <  2:1208194/140‑1 (MQ=255)

                                                                                                                                    ccTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCAtt    <  2:745298/140‑1 (MQ=255)

                                                                                                                                    ccTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCAtt    <  2:874910/140‑1 (MQ=255)

                                                                                                                                     cTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCa      <  2:1106328/137‑1 (MQ=255)

                                                                                                                                     cTGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCa      >  1:1106328/1‑137 (MQ=255)

                                                                                                                                      tGGCTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTAt  <  2:446580/140‑1 (MQ=255)

TGCGTCTCACCGATAAAGATGAGACGCGGAAAGATTAGTAACTGGACTGCTGGGATTTTTCAGCCTGGATACGCTGGTAGATCTCTTCACGGTGAACAGAAACTTCCTTCGGGGCATTTACGCCAATACGTACCTGGTTGCCCTTTACCCCTAAAACTGTCACGGTGACCTCATCCCCAATCATGAGGGTCTCACCAACTCGACGAGTCAGAATCAGCATTCTTTGCTCCTTGAAAGATTAAAAGAGTCGGGTCTCTCTGTATCCCGGCATTAT  >  NC_000913/2818927‑2819200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`