BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,138,609	G→A	A78T (GCG→ACG)	flgK →	flagellar hook‑filament junction protein 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,138,609	0	G	A	100.0%	334.5 / NA	94	A78T (GCG→ACG)	flgK	flagellar hook‑filament junction protein 1
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (49/45); total (49/45)

Only 100 of 102 total aligned reads displayed.

CCGGATATACCCGCCAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGGCGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAA  >  NC_000913/1138472‑1138745

ccGGATATACCCGCCAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTgcgacg                                                                                                                                        >  2:1196498/1‑140 (MQ=255)

ccGGATATACCCGCCAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTgcgacg                                                                                                                                        >  2:1521983/1‑140 (MQ=255)

 gggATATACCCGCCAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGacgc                                                                                                                                       <  1:1393425/139‑1 (MQ=255)

            gCCAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGt                                                                                                                            >  2:1582034/1‑140 (MQ=255)

             ccAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTa                                                                                                                           >  2:750653/1‑140 (MQ=255)

             ccAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTa                                                                                                                           >  1:592404/1‑140 (MQ=255)

              cAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGacgc                                                                                                                                       >  1:1468356/1‑127 (MQ=255)

              cAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGacgc                                                                                                                                       <  2:1468356/127‑1 (MQ=255)

              cAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGCGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAg                                                                                                                          >  2:804850/1‑140 (MQ=255)

              cAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGATGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAg                                                                                                                          <  2:1098830/140‑1 (MQ=255)

                     cTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTg                                                                                                                   >  2:43060/1‑140 (MQ=255)

                          atGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGc                                                                                                              <  2:736550/140‑1 (MQ=255)

                           tGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGcc                                                                                                             >  1:371277/1‑140 (MQ=255)

                           tGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGcc                                                                                                             <  1:43060/140‑1 (MQ=255)

                             gcgcAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCt                                                                                                                    >  1:663740/1‑131 (MQ=255)

                             gcgcAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCt                                                                                                                    <  2:663740/131‑1 (MQ=255)

                               gcAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCt                                                                                                         <  1:804850/140‑1 (MQ=255)

                                cAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTa                                                                                                        >  2:1112941/1‑140 (MQ=255)

                                cAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTa                                                                                                        >  2:756037/1‑140 (MQ=255)

                                   gCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGa                                                                                                     >  1:925292/1‑140 (MQ=255)

                                   gCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGa                                                                                                     >  2:421236/1‑140 (MQ=255)

                                   gCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGa                                                                                                     >  1:200160/1‑140 (MQ=255)

                                   gCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGa                                                                                                     >  2:1610031/1‑140 (MQ=255)

                                    ccAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAg                                                                                                    <  1:750653/140‑1 (MQ=255)

                                       aTAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAg                                                                                                 <  2:52551/140‑1 (MQ=255)

                                             cGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCg                                                                                                           <  2:368121/124‑1 (MQ=255)

                                             cGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCg                                                                                                           >  1:368121/1‑124 (MQ=255)

                                             cGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCg                                                                                           >  1:943578/1‑140 (MQ=255)

                                             cGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCg                                                                                           >  2:1521883/1‑140 (MQ=255)

                                             cGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCg                                                                                           >  2:107375/1‑140 (MQ=255)

                                                tGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGaaa                                                                                        <  2:752289/140‑1 (MQ=255)

                                                  ggCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAAt                                                                                      >  2:1210709/1‑140 (MQ=255)

                                                   gcgcTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATc                                                                                     >  2:729475/1‑140 (MQ=255)

                                                       tGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACa                                                                                 <  1:421236/140‑1 (MQ=255)

                                                       tGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACa                                                                                 >  2:313703/1‑140 (MQ=255)

                                                       tGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACa                                                                                 >  2:843281/1‑140 (MQ=255)

                                                        ggcggcTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACaa                                                                                >  2:1122877/1‑140 (MQ=255)

                                                          cggcTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAata                                                                              <  1:1536764/140‑1 (MQ=255)

                                                          cggcTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAata                                                                              <  1:1122877/140‑1 (MQ=255)

                                                          cggcTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAata                                                                              <  1:756037/140‑1 (MQ=255)

                                                              tGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGct                                                                          <  1:955134/140‑1 (MQ=255)

                                                               gggTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGctc                                                                         <  2:1267449/140‑1 (MQ=255)

                                                               gggTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGctc                                                                         <  1:313703/140‑1 (MQ=255)

                                                               gggTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGctc                                                                         <  1:729475/140‑1 (MQ=255)

                                                                 gTTGGCCATGGTGGCTTCGTGTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTTCCCACCAGTTCCGTGCGGCGCAGGCGCAAAGTGGCGGTCTGACTGCCCGCTATGCGGAGATGTCGAAAATCGACGATATGAtctc                                                                       <  2:925291/140‑1 (MQ=255)

                                                                 gTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCtctc                                                                       <  2:925292/140‑1 (MQ=255)

                                                                          ggTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTAc                                                              <  1:1521883/140‑1 (MQ=255)

                                                                          ggTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTAc                                                              <  2:200160/140‑1 (MQ=255)

                                                                              tCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACCGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACctct                                                          >  2:303881/1‑140 (MQ=255)

                                                                               cTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCtt                                                         >  2:1447279/1‑140 (MQ=255)

                                                                                tACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTc                                                        <  1:843281/140‑1 (MQ=255)

                                                                                tACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTc                                                        <  2:1452446/140‑1 (MQ=255)

                                                                                tACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTc                                                        <  1:1210709/140‑1 (MQ=255)

                                                                                tACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTc                                                        <  1:159362/140‑1 (MQ=255)

                                                                                 aCGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCg                                                       <  1:107375/140‑1 (MQ=255)

                                                                                        tGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATTTGCTCTCCACCAGTACCTCTTCGCTGGCaa                                                >  2:655022/1‑140 (MQ=255)

                                                                                        tGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACttcttc                                                        >  1:193614/1‑132 (MQ=255)

                                                                                        tGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACttcttc                                                        <  2:193614/132‑1 (MQ=255)

                                                                                        tGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCaa                                                >  2:977884/1‑140 (MQ=255)

                                                                                        tGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCaa                                                >  2:103322/1‑140 (MQ=255)

                                                                                        tGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCaa                                                <  1:1196498/140‑1 (MQ=255)

                                                                                             tgCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAg                                           >  1:492539/1‑140 (MQ=255)

                                                                                               cAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGAt                                         >  2:297698/1‑140 (MQ=255)

                                                                                                 gCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGc                                       >  1:1494256/1‑140 (MQ=255)

                                                                                                 gCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGc                                       <  1:299608/140‑1 (MQ=255)

                                                                                                  cGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCa                                      >  1:720289/1‑140 (MQ=255)

                                                                                                    tGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAgg                                    <  1:151068/140‑1 (MQ=255)

                                                                                                    tGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAgg                                    >  2:1268588/1‑140 (MQ=255)

                                                                                                      aGTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGAt                                  <  1:1447279/140‑1 (MQ=255)

                                                                                                       gTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGAtt                                 >  2:573218/1‑140 (MQ=255)

                                                                                                       gTATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGAtt                                 >  1:362688/1‑140 (MQ=255)

                                                                                                        tATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGAttt                                >  1:48104/1‑140 (MQ=255)

                                                                                                        tATGATGCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGAttt                                <  1:1112941/140‑1 (MQ=255)

                                                                                                            atgCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAgg                                    >  1:563614/1‑132 (MQ=255)

                                                                                                            atgCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAgg                                    <  2:563614/132‑1 (MQ=255)

                                                                                                            atgCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATttcttc                            >  2:1524979/1‑140 (MQ=255)

                                                                                                            atgCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATttcttc                            >  1:769381/1‑140 (MQ=255)

                                                                                                            atgCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATttcttc                            >  1:783343/1‑140 (MQ=255)

                                                                                                              gCGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATTTGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCAc                          <  1:655022/140‑1 (MQ=255)

                                                                                                               cGTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCAcc                         <  2:1085370/140‑1 (MQ=255)

                                                                                                                gTTTATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCa                        >  1:1103644/1‑140 (MQ=255)

                                                                                                                 tttATTACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAg                       <  2:371277/140‑1 (MQ=255)

                                                                                                                 tttATCACCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAg                       <  2:943578/140‑1 (MQ=255)

                                                                                                                   tattaCCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAgg                                    <  2:57731/125‑1 (MQ=255)

                                                                                                                   tattaCCAACCAGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAgg                                    >  1:57731/1‑125 (MQ=255)

                                                                                                                         caaccaGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCaaa               <  2:955831/140‑1 (MQ=255)

                                                                                                                          aaccaGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCAc                          <  1:1094082/128‑1 (MQ=255)

                                                                                                                          aaccaGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCAc                          >  2:1094082/1‑128 (MQ=255)

                                                                                                                           accaGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACg             <  2:48104/140‑1 (MQ=255)

                                                                                                                           accaGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACg             <  1:1524979/140‑1 (MQ=255)

                                                                                                                           accaGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACg             <  1:1610031/140‑1 (MQ=255)

                                                                                                                           accaGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACg             <  2:720289/140‑1 (MQ=255)

                                                                                                                           accaGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACg             >  2:1369066/1‑140 (MQ=255)

                                                                                                                           accaGTTACGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACg             >  2:1622228/1‑140 (MQ=255)

                                                                                                                                   cGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAg     <  1:977884/140‑1 (MQ=255)

                                                                                                                                   cGTGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAg     >  1:536952/1‑140 (MQ=255)

                                                                                                                                     tGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTa   >  1:509134/1‑140 (MQ=255)

                                                                                                                                     tGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTa   <  2:1037979/140‑1 (MQ=255)

                                                                                                                                     tGCGACGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATATCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTa   >  2:1596004/1‑140 (MQ=255)

                                                                                                                                      gcgacgCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTaa  <  2:509134/140‑1 (MQ=255)

CCGGATATACCCGCCAAACCACTATTATGGCGCAGGCCAATAGCACGTTGGGCGCTGGCGGCTGGGTTGGCAATGGTGTCTACGTTTCTGGTGTGCAGCGTGAGTATGATGCGTTTATTACCAACCAGTTACGTGCGGCGCAGACGCAAAGTAGCGGTCTGACTGCCCGCTATGAGCAGATGTCGAAAATCGACAATATGCTCTCCACCAGTACCTCTTCGCTGGCAACACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAA  >  NC_000913/1138472‑1138745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`