BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,559,890	T→C	S345P (TCA→CCA)	intZ →	CPZ‑55 prophage; putative phage integrase IntZ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,559,890	0	T	C	100.0%	447.9 / NA	125	S345P (TCA→CCA)	intZ	CPZ‑55 prophage; putative phage integrase IntZ
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (60/65); total (60/65)

Only 100 of 126 total aligned reads displayed.

TTTCGTCTTTCCAGGCCGATTCATGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGAT  >  NC_000913/2559754‑2560024

tttCGTCTTTCCAGGCCGATTCATGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAg                                                                                                                                     >  2:1324616/1‑140 (MQ=255)

 ttCGTCTTTCCAGGCCGATTCATGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAgg                                                                                                                                    >  1:1053608/1‑140 (MQ=255)

 ttCGTCTTTCCAGGCCGATTCATGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAgg                                                                                                                                    >  2:713220/1‑140 (MQ=255)

  tCGTCTTTCCAGGCCGATTCATGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGc                                                                                                                                   <  2:419937/140‑1 (MQ=255)

      cTTTCCAGGCCGATTCATGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGAt                                                                                                                               <  1:1324616/140‑1 (MQ=255)

         tCCAGGCCGATTCATGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACt                                                                                                                            >  2:1662219/1‑140 (MQ=255)

                cGATTCATGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCgga                                                                                                                     <  1:719505/140‑1 (MQ=255)

                  aTTCATGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCg                                                                                                                          >  2:830064/1‑133 (MQ=255)

                  aTTCATGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCggat                                                                                                                    <  1:610344/139‑1 (MQ=255)

                   ttCATGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCggattg                                                                                                                  >  1:1176422/1‑140 (MQ=255)

                   ttCATGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCggat                                                                                                                    <  2:1340662/138‑1 (MQ=255)

                   ttCATGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCgga                                                                                                                     >  2:198780/1‑137 (MQ=255)

                   ttCATGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCgga                                                                                                                     <  1:198780/137‑1 (MQ=255)

                     cATGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCggattgga                                                                                                                <  2:107626/140‑1 (MQ=255)

                       tGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCggattggatt                                                                                                              <  2:1176422/140‑1 (MQ=255)

                       tGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCggattggatt                                                                                                              >  1:1464643/1‑140 (MQ=255)

                       tGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCggattggatt                                                                                                              <  1:829857/140‑1 (MQ=255)

                       tGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACAGCACTTAACGAACCAGGCAGATACTCGCCggattggatt                                                                                                              <  1:1377379/140‑1 (MQ=255)

                           tAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTgaga                                                                                                          <  2:634839/140‑1 (MQ=255)

                           tAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTgaga                                                                                                          <  2:644595/140‑1 (MQ=255)

                           tAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTgaga                                                                                                          <  1:1618408/140‑1 (MQ=255)

                             aaCCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATc                                                                                                        >  2:891851/1‑140 (MQ=255)

                             aaCCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATc                                                                                                        <  2:522630/140‑1 (MQ=255)

                             aaCCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATc                                                                                                        >  1:889582/1‑140 (MQ=255)

                              aCCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATcc                                                                                                       >  1:294337/1‑140 (MQ=255)

                              aCCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATcc                                                                                                       <  2:1655543/140‑1 (MQ=255)

                              aCCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATcc                                                                                                       <  1:356211/140‑1 (MQ=255)

                              aCCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATcc                                                                                                       >  1:108676/1‑140 (MQ=255)

                                ccTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCaa                                                                                                     >  1:1115227/1‑140 (MQ=255)

                                    gTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAg                                                                                                 >  1:1568831/1‑140 (MQ=255)

                                         ccagcGCGATACTTAAAGCGCTTGAGCGTATCGTGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCAc                                                                                            >  2:377780/1‑140 (MQ=255)

                                         ccagcGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCAc                                                                                            >  2:145301/1‑140 (MQ=255)

                                         ccagcGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCAc                                                                                            <  1:1554656/140‑1 (MQ=255)

                                          cagcGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACg                                                                                           >  2:1509784/1‑140 (MQ=255)

                                            gcgcGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTc                                                                                         <  2:889582/140‑1 (MQ=255)

                                             cgcgATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTcc                                                                                        >  2:677486/1‑140 (MQ=255)

                                              gcgATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTccc                                                                                       <  1:1509784/140‑1 (MQ=255)

                                              gcgATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTccc                                                                                       >  2:1350525/1‑140 (MQ=255)

                                              gcgATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTccc                                                                                       <  1:1662219/140‑1 (MQ=255)

                                                gATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGa                                                                                     <  1:537452/140‑1 (MQ=255)

                                                    cTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAggg                                                                                 <  1:1350525/140‑1 (MQ=255)

                                                       aaaGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAAt                                                                              >  1:1322492/1‑140 (MQ=255)

                                                        aaGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATa                                                                             <  1:186855/140‑1 (MQ=255)

                                                            gcTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAggg                                                                         >  1:816883/1‑140 (MQ=255)

                                                            gcTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAggg                                                                         <  2:1053608/140‑1 (MQ=255)

                                                            gcTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAggg                                                                         <  2:1151190/140‑1 (MQ=255)

                                                             cTTGAGCGTATCGTGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAgggg                                                                        <  1:377780/140‑1 (MQ=255)

                                                             cTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAgggg                                                                        <  2:1622521/140‑1 (MQ=255)

                                                             cTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAgggg                                                                        <  1:891851/140‑1 (MQ=255)

                                                             cTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAgggg                                                                        <  2:108676/140‑1 (MQ=255)

                                                              ttGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAg                                                                                   >  2:1603588/1‑128 (MQ=255)

                                                              ttGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAg                                                                                   <  1:1603588/128‑1 (MQ=255)

                                                              ttGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGc                                                                       >  1:1485729/1‑140 (MQ=255)

                                                              ttGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGc                                                                       >  2:816562/1‑140 (MQ=255)

                                                              ttGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGc                                                                       >  1:1388039/1‑140 (MQ=255)

                                                                 aGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGtt                                                                    <  1:1319299/140‑1 (MQ=255)

                                                                 aGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGtt                                                                    <  1:103758/140‑1 (MQ=255)

                                                                     tATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAggg                                                                         <  2:768422/131‑1 (MQ=255)

                                                                     tATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAggg                                                                         >  1:768422/1‑131 (MQ=255)

                                                                     tATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTtata                                                                >  2:1239400/1‑140 (MQ=255)

                                                                         gggTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCa                                                            <  2:294136/140‑1 (MQ=255)

                                                                           gTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAgg                                                          <  2:1568831/140‑1 (MQ=255)

                                                                            tACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGc                                                         >  2:590779/1‑140 (MQ=255)

                                                                              cAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACCTAACGAACCAGGCAGATACTCGCCGGTTTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTg                                                       <  2:1485729/140‑1 (MQ=255)

                                                                               aaGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGc                                                      <  2:1388039/140‑1 (MQ=255)

                                                                                 gTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTACCt                                                    >  1:1318116/1‑140 (MQ=255)

                                                                                     aTAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCTGGCTGCCTACCt                                                >  2:309860/1‑140 (MQ=255)

                                                                                     aTAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTAcc                                                 <  1:706714/139‑1 (MQ=255)

                                                                                     aTAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCt                                                >  2:689500/1‑140 (MQ=255)

                                                                                     aTAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCt                                                >  2:1613760/1‑140 (MQ=255)

                                                                                     aTAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCt                                                >  1:299551/1‑140 (MQ=255)

                                                                                     aTAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCt                                                >  2:275442/1‑140 (MQ=255)

                                                                                         ccACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAg                                            <  2:294337/140‑1 (MQ=255)

                                                                                         ccACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAg                                            >  2:232643/1‑140 (MQ=255)

                                                                                           acaGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCa                                          >  1:525025/1‑140 (MQ=255)

                                                                                           acaGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGACTGCCTACCTGAAGCa                                          >  1:1185895/1‑140 (MQ=255)

                                                                                              ggCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACg                                       <  2:1322492/140‑1 (MQ=255)

                                                                                                   cGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAg                                  >  1:656268/1‑140 (MQ=255)

                                                                                                   cGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAg                                  >  1:1401265/1‑140 (MQ=255)

                                                                                                      cTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGGAACGGCGAGCaa                               <  1:689500/140‑1 (MQ=255)

                                                                                                      cTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCaa                               <  1:275442/140‑1 (MQ=255)

                                                                                                      cTGGCGCACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCaa                               <  1:1239400/140‑1 (MQ=255)

                                                                                                         gcgcACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAg                                  <  1:107640/134‑1 (MQ=255)

                                                                                                         gcgcACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAg                                  >  2:107640/1‑134 (MQ=255)

                                                                                                         gcgcACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAatga                            >  2:412756/1‑140 (MQ=255)

                                                                                                           gcACAACGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAatgatg                          <  2:1401265/140‑1 (MQ=255)

                                                                                                               aaCGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAgg                      >  2:1408220/1‑140 (MQ=255)

                                                                                                                 cGTTCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGAt                    <  1:1613760/140‑1 (MQ=255)

                                                                                                                   ttCAGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTa                  >  2:589428/1‑140 (MQ=255)

                                                                                                                      aGCACCGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGc               <  1:439763/140‑1 (MQ=255)

                                                                                                                           cGCACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACg          >  1:409908/1‑140 (MQ=255)

                                                                                                                             cACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGa            <  2:745996/136‑1 (MQ=255)

                                                                                                                             cACTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCt        >  2:588410/1‑140 (MQ=255)

                                                                                                                              aCTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTa       <  2:156087/140‑1 (MQ=255)

                                                                                                                               cTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTAt      <  1:589428/140‑1 (MQ=255)

                                                                                                                               cTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTAt      <  2:1464643/140‑1 (MQ=255)

                                                                                                                               cTTAACGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGACTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTAt      <  2:1185895/140‑1 (MQ=255)

                                                                                                                                  aaCGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGa   >  1:824384/1‑140 (MQ=255)

                                                                                                                                   aCGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTa       <  1:937852/135‑1 (MQ=255)

                                                                                                                                   aCGAACCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGAt  <  1:482472/140‑1 (MQ=255)

TTTCGTCTTTCCAGGCCGATTCATGGATAAACCCTTGTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGAT  >  NC_000913/2559754‑2560024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`