Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
16 3 3
17 3 3
18 3 3
19 3 3
20 3 3
6 16 16

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 5 6
Multiple Base Substitutions 0 0
Deletions 4 47
Insertions 3 20
Mobile Element Insertions 0 0
Amplifications 55 64
Gene Conversions 0 0
Inversions 0 0
Total 67 137

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 30 0 2191.7 6387500 98.3% 6278912 135.9
A16 F2 I0 R1 170 0 5346.0 7579138 98.4% 7457871 136.3
A16 F15 I0 R1 103 0 4602.7 5626934 98.3% 5531276 135.7
A16 F38 I0 R1 120 0 8241.7 7251732 98.4% 7135704 136.0
A17 F2 I0 R1 129 0 13394.0 6802224 98.3% 6686586 134.9
A17 F13 I0 R1 81 0 3576.1 5231546 98.0% 5126915 134.9
A17 F35 I0 R1 254 0 11756.3 9221556 98.4% 9074011 136.4
A18 F2 I0 R1 64 0 3647.6 4805040 98.4% 4728159 135.8
A18 F15 I0 R1 163 0 6201.0 7535836 98.3% 7407726 135.5
A18 F38 I0 R1 97 0 6971.0 5917352 98.5% 5828591 136.2
A19 F2 I0 R1 93 0 4302.9 5521946 98.3% 5428072 135.2
A19 F15 I0 R1 104 0 5534.5 5817890 98.2% 5713167 135.4
A19 F39 I0 R1 206 0 10567.3 8988966 98.3% 8836153 135.3
A20 F2 I0 R1 116 0 4673.8 6317710 98.4% 6216626 136.4
A20 F15 I0 R1 138 0 7339.3 7031704 98.4% 6919196 135.8
A20 F38 I0 R1 121 0 8454.4 6876920 98.2% 6753135 135.8

Mutation Needle Plot

Mutation Targets

Entries to show