Frequency Filtering Thresholds

Minimum Cutoff:       Maximum Cutoff:

Ignored Genes

Enter gene(s) separated by ',' ex: tpoB,folD

Ignored Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details
1919077 560880 SNP C→T
CIW80_RS03085, pilV
hypothetical protein/shufflon system plasmid conjugative transfer pilus tip adhesin PilV intergenic (+62/+53)
1919078 794460 SNP C→T
dgcE
diguanylate cyclase A568V (GCG→GTG)
1919079 917427 INS +TT
yeiP, yeiQ
elongation factor P-like protein YeiP/mannitol dehydrogenase family protein intergenic (+130/‑91)
1919083 3196873 INS +GCGTAATCGGTT
ampC
BlaEC family class C beta-lactamase coding (944/1122 nt)
1919084 4870914 DEL Δ1 bp
dhaK, dhaR
dihydroxyacetone kinase subunit DhaK/dihydroxyacetone kinase operon transcriptional regulator DhaR intergenic (‑110/‑118)
2114416 628478 DEL Δ1,286 bp
clbP
[clbP]
2114418 756115 SNP A→G
galE
UDP-glucose 4-epimerase GalE G181G (GGT→GGC)
2114514 2214419 SNP T→C
rpsL
30S ribosomal protein S12 K43R (AAA→AGA)
2114515 2320775 SNP C→T
CIW80_RS11675
DNA-processing protein DprA G274S (GGC→AGC)
2114586 3424795 SNP A→C
yjiJ, yjiK
MFS transporter/YjiK family protein intergenic (‑41/+27)
2114602 3656188 SNP A→G
htrE
outer membrane usher protein S549P (TCC→CCC)
2114617 3792805 SNP A→G
fucP
L-fucose:H+ symporter permease Y421C (TAC→TGC)
2114658 457895 DEL Δ1 bp
CIW80_RS02445
DUF968 domain-containing protein pseudogene (287/997 nt)
2114659 2408862 DEL Δ1 bp
mdtF
multidrug efflux pump RND permease MdtF pseudogene (1098/3115 nt)
2114660 2590564 INS +TGGT
CIW80_RS26455
hypothetical protein coding (110/153 nt)
2114729 4678047 SNP A→C
agn43, CIW80_RS23450
autotransporter adhesin Ag43/hypothetical protein intergenic (+45/‑76)
2114921 1633846 SNP T→G
yqeB
selenium-dependent molybdenum cofactor biosynthesis protein YqeB N253T (AAC→ACC)
2115575 1535365 SNP A→C
fucI
L-fucose isomerase K35N (AAA→AAC)
2115600 3559837 DEL Δ2,343 bp
polB
DNA polymerase II coding (10‑2352/2352 nt)
2115602 3844426 DEL Δ1,036 bp
dinB
DNA polymerase IV coding (2‑1037/1056 nt)
2115609 4419919 SNP C→G
lysO, aqpZ
L-lysine exporter LysO/aquaporin Z intergenic (‑340/+154)
2115610 4419926 SNP C→G
lysO, aqpZ
L-lysine exporter LysO/aquaporin Z intergenic (‑347/+147)
2115615 4844868 DEL Δ1,662 bp
umuD,umuC
[umuD],[umuC]
2115620 1376 DEL Δ1 bp
–, putative HTH domain protein
–/– intergenic (–/+341)
2115626 2078 INS +A
putative HTH domain protein, uncharacterized protein
–/– intergenic (‑44/‑113)
2115627 4123 INS +T
putative rom (RNA I inhibition modulator protein), –
–/– intergenic (‑341/–)
2115628 4127 SNP C→A
putative rom (RNA I inhibition modulator protein), –
–/– intergenic (‑345/–)
2115629 4132 SUB 4 bp→TA
putative rom (RNA I inhibition modulator protein), –
–/– intergenic (‑350/–)
2115632 1317 INS +A
–, putative HTH domain protein
–/– intergenic (–/+400)
2115634 4132 DEL Δ4 bp
putative rom (RNA I inhibition modulator protein), –
–/– intergenic (‑350/–)
2115652 4615712 SNP G→T
CIW80_RS23065
hypothetical protein G122C (GGT→TGT)
2115697 3560958 SNP G→T
polB
DNA polymerase II L411I (CTT→ATT)

Starting Strain Mutations

Mut ID Position Mutation Type Sequence Change Gene Function Product GO Process GO Component Details