Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 1 1
12 1 1
12 12 12

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 989 1157
Multiple Base Substitutions 0 0
Deletions 86 177
Insertions 105 160
Mobile Element Insertions 4 15
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 1184 1509

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 120 0 97.0 3206026 99.3% 3183583 140.0
A2 F28 I1 R1 116 0 98.7 3298914 99.2% 3272522 139.9
A3 F28 I1 R1 124 0 90.1 3003320 99.2% 2979293 139.9
A4 F28 I1 R1 162 0 93.0 3098984 99.0% 3067994 139.9
A5 F28 I1 R1 108 0 95.2 3177646 99.2% 3152224 139.9
A6 F28 I1 R1 132 0 61.4 2079690 99.1% 2060972 139.8
A7 F28 I1 R1 106 0 90.3 3060316 99.2% 3035833 139.9
A8 F28 I1 R1 138 0 62.6 2119710 99.4% 2106991 138.9
A9 F28 I1 R1 120 0 56.0 1898522 99.4% 1887130 138.5
A10 F28 I1 R1 126 0 72.5 2472046 99.4% 2457213 138.6
A11 F28 I1 R1 134 0 60.5 2175152 94.0% 2044642 138.5
A12 F28 I1 R1 123 0 51.0 1731148 99.3% 1719029 138.6

Mutation Needle Plot

Mutation Targets

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