mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 2,799 | A→G | *821W (TGA→TGG) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 9,905 | (C)6→7 | intergenic (+12/+23) | mog → / ← satP | molybdopterin adenylyltransferase/acetate/succinate:H(+) symporter |
| RA | 86,183 | A→G | Y185C (TAC→TGC) | ilvI → | acetolactate synthase/acetohydroxybutanoate synthase, catalytic subunit |
| RA | 101,615 | T→C | V284A (GTC→GCC) | murC → | UDP‑N‑acetylmuramate‑‑L‑alanine ligase |
| RA | 103,419 | A→G | T89A (ACC→GCC) | ftsQ → | cell division protein FtsQ |
| RA | 108,767 | A→G | A163A (GCA→GCG) | secA → | protein translocation ATPase |
| RA | 112,234 | A→G | R122R (CGT→CGC) | zapD ← | cell division factor ZapD |
| RA | 150,021 | A→G | G311G (GGT→GGC) | yadC ← | fimbrial tip‑adhesin YadC |
| RA | 195,993 | A→G | Y106C (TAC→TGC) | cdsA → | CDP‑diglyceride synthetase |
| RA | 216,985 | A→G | Y7H (TAC→CAC) | yaeF ← | peptidase C92 family protein |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 268,509 | A→G | V151A (GTT→GCT) | ykfA ← | CP4‑6 prophage; putative GTP‑binding protein YkfA |
| RA | 278,775 | G→A | R10C (CGC→TGC) | afuC ← | CP4‑6 prophage; ABC transporter ATP‑binding protein AfuC |
| RA | 279,935 | A→G | intergenic (‑60/+450) | insA‑2 ← / ← yagB | IS1 protein InsA/orphan antitoxin YagB |
| RA | 283,807 | A→G | T203A (ACC→GCC) | yagF → | CP4‑6 prophage; D‑xylonate dehydratase |
| RA | 287,576 | A→G | Y263C (TAC→TGC) | yagH → | CP4‑6 prophage; putative xylosidase/arabinosidase |
| RA | 292,395 | T→C | Y185C (TAC→TGC) | yagK ← | CP4‑6 prophage; uncharacterized protein YagK |
| RA | 303,093 | (G)6→7 | coding (103/615 nt) | yagU → | inner membrane protein that contributes to acid resistance |
| RA | 324,995 | C→T | A124T (GCC→ACC) | ykgH ← | uncharacterized protein YkgH |
| RA | 337,584 | A→G | E269E (GAA→GAG) | yahF → | putative acyl‑CoA synthetase YahF |
| RA | 375,721 | C→T | A88V (GCG→GTG) | mhpT → | 3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| RA | 387,582 | T→C | R204R (CGT→CGC) | tauC → | taurine ABC transporter membrane subunit |
| RA | 407,543 | A→G | K39R (AAG→AGG) | aroM → | protein AroM |
| RA | 415,717 | A→G | S13P (TCA→CCA) | sbcC ← | ATP dependent, structure specific DNA nuclease ‑ SbcC subunit |
| RA | 459,368 | G→A | D161N (GAT→AAT) | lon → | Lon protease |
| RA | 506,791 | A→G | Y98H (TAC→CAC) | ybaK ← | Cys‑tRNA(Pro) and Cys‑tRNA(Cys) deacylase |
| RA | 512,835 | A→G | N87S (AAC→AGC) | ybaT → | putative transporter YbaT |
| RA | 527,577 | T→C | intergenic (+36/‑4) | rhsD → / → ybbC | protein RhsD/PF15631 family protein YbbC |
| RA | 670,318 | A→G | T85T (ACT→ACC) | nadD ← | nicotinate‑mononucleotide adenylyltransferase |
| JC JC | 679,481 | IS5 (–) +4 bp | intergenic (‑75/‑24) | ybeT ← / → ybeU | Sel1 repeat‑containing protein YbeT/DUF1266 domain‑containing protein YbeU |
| RA | 833,991 | T→C | C308R (TGT→CGT) | dinG → | ATP‑dependent DNA helicase DinG |
| RA | 837,442 | (A)8→7 | intergenic (+6/+223) | hcxB → / ← ybiJ | hydroxycarboxylate dehydrogenase B/DUF1471 domain‑containing protein YbiJ |
| RA | 857,914 | (T)5→4 | coding (1148/1266 nt) | ybiU ← | DUF1479 domain‑containing protein YbiU |
| RA | 884,345 | (G)5→4 | coding (673/1233 nt) | mdfA → | multidrug efflux pump MdfA/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 894,476 | C→T | N231N (AAC→AAT) | potF → | putrescine ABC transporter periplasmic binding protein |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 934,792 | A→G | E523E (GAA→GAG) | ftsK → | cell division DNA translocase FtsK |
| RA | 943,068 | T→G | S704A (TCT→GCT) | dmsA → | dimethyl sulfoxide reductase subunit A |
| RA | 952,685 | A→G | R290R (CGT→CGC) | pflB ← | pyruvate formate‑lyase |
| RA | 974,067 | A→G | K177K (AAA→AAG) | cmoM → | tRNA cmo(5)U34 methyltransferase |
| RA | 976,235 | T→C | I205T (ATT→ACT) | mukE → | chromosome partitioning protein MukE |
| RA | 1,001,023 | (A)8→7 | coding (1808/2601 nt) | elfC → | putative fimbrial usher protein ElfC |
| RA | 1,010,898 | C→T | A312V (GCC→GTC) | uup → | ATP‑binding protein with possible role in replication |
| RA | 1,029,454 | Δ1 bp | coding (516/1191 nt) | rlmI ← | 23S rRNA m(5)C1962 methyltransferase |
| RA | 1,064,804 | A→G | T257A (ACG→GCG) | yccE → | uncharacterized protein YccE |
| RA | 1,066,190 | T→C | C202C (TGT→TGC) | agp → | glucose‑1‑phosphatase |
| RA | 1,129,332 | A→G | V498V (GTA→GTG) | murJ → | putative lipid II flippase MurJ |
| RA | 1,136,798 | G→A | L175L (TTG→TTA) | flgI → | flagellar P‑ring protein |
| RA | 1,143,140 | T→C | T410A (ACT→GCT) | rne ← | ribonuclease E |
| RA | 1,200,747 | A→G | S20S (AGT→AGC) | intE ← | e14 prophage; putative integrase |
| RA | 1,220,971 | G→A | pseudogene (1371/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,236,881 | C→T | A121T (GCT→ACT) | ycgB ← | PF04293 family protein YcgB |
| RA | 1,237,865 | A→G | S99G (AGC→GGC) | dadA → | D‑amino acid dehydrogenase |
| RA | 1,260,895 | (A)7→8 | intergenic (‑92/+33) | dauA ← / ← prs | aerobic C4‑dicarboxylate transporter DauA/ribose‑phosphate diphosphokinase |
| RA | 1,274,761 | T→C | S326S (AGT→AGC) | ychO → | putative invasin YchO |
| RA | 1,295,487 | C→T | A879T (GCT→ACT) | adhE ← | aldehyde‑alcohol dehydrogenase |
| RA | 1,319,831 | A→G | G518G (GGT→GGC) | trpD ← | anthranilate synthase subunit TrpD |
| RA | 1,348,839 | A→G | V25A (GTG→GCG) | rnb ← | RNase II |
| RA | 1,353,137 | A→G | C164C (TGT→TGC) | sapD ← | putrescine ABC exporter ATP binding protein SapD |
| RA | 1,360,148 | A→G | L254P (CTG→CCG) | puuA ← | glutamate‑putrescine ligase |
| RA | 1,397,844 | T→C | H260R (CAC→CGC) | uspE ← | universal stress protein with a role cellular motility |
| RA | 1,400,524 | A→G | V417A (GTA→GCA) | abgT ← | p‑aminobenzoyl glutamate:H(+) symporter |
| RA | 1,438,355 | T→C | T810T (ACA→ACG) | ydbK ← | putative pyruvate‑flavodoxin oxidoreductase |
| RA | 1,474,342 | T→C | V41A (GTG→GCG) | pdxI → | pyridoxine 4‑dehydrogenase |
| RA | 1,505,496 | T→G | K195N (AAA→AAC) | ydcO ← | putative transport protein YdcO |
| RA | 1,541,351 | C→T | E414K (GAA→AAA) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,570,413 | A→G | V26A (GTA→GCA) | gadC ← | L‑glutamate:4‑aminobutyrate antiporter |
| RA | 1,588,201 | A→G | G32G (GGT→GGC) | ydeR ← | putative fimbrial protein YdeR |
| RA | 1,594,131 | (C)8→6 | pseudogene (3955‑3956/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| RA | 1,604,295 | T→C | G83G (GGT→GGC) | lsrD → | Autoinducer‑2 ABC transporter membrane subunit LsrD |
| RA | 1,631,706 | T→C | N194D (AAC→GAC) | ydfJ ← | putative transporter YdfJ |
| RA | 1,633,705 | T→C | G28G (GGT→GGC) | pinQ → | Qin prophage; putative site‑specific recombinase |
| RA | 1,634,642 | C→T | G82S (GGC→AGC) | tfaQ ← | Qin prophage; putative tail fiber assembly protein TfaQ |
| RA | 1,658,260 | T→C | C64C (TGT→TGC) | ynfE → | putative selenate reductase YnfE |
| RA | 1,661,914 | T→C | G453G (GGT→GGC) | ynfF → | putative selenate reductase YnfF |
| RA | 1,674,092 | G→A | P60P (CCG→CCA) | tqsA → | autoinducer 2 exporter |
| RA | 1,685,542 | (C)6→5 | coding (1047/1404 nt) | fumC ← | fumarase C |
| RA | 1,703,538 | T→C | E257E (GAA→GAG) | ydgJ ← | putative oxidoreductase YdgJ |
| RA | 1,704,559 | T→C | R3R (CGT→CGC) | blr → | beta‑lactam resistance protein |
| RA | 1,714,326 | (T)9→8 | intergenic (+55/‑51) | dtpA → / → gstA | dipeptide/tripeptide:H(+) symporter DtpA/glutathione S‑transferase GstA |
| RA | 1,750,257 | A→T | I31N (ATC→AAC) | ydhU ← | putative cytochrome YdhU |
| RA | 1,771,945 | T→C | V292A (GTC→GCC) | ydiM → | putative exporter YdiM |
| RA | 1,806,470 | T→C | V34A (GTG→GCG) | pfkB → | 6‑phosphofructokinase II |
| RA | 1,873,384 | A→G | K448K (AAA→AAG) | dgcJ → | putative diguanylate cyclase DgcJ |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,883,729 | C→T | S181F (TCC→TTC) | yeaV → | putative transporter YeaV |
| RA | 1,928,893 | G→A | intergenic (‑54/+155) | ptrB ← / ← yebE | oligopeptidase B/conserved inner membrane protein YebE |
| RA | 1,933,631 | T→C | D325G (GAC→GGC) | edd ← | phosphogluconate dehydratase |
| RA | 1,959,168 | (C)6→7 | coding (99/747 nt) | cutC ← | protein CutC |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 1,987,599 | G→A | P54S (CCC→TCC) | yecJ ← | DUF2766 domain‑containing protein YecJ |
| RA | 1,996,183 | T→C | N217S (AAC→AGC) | sdiA ← | DNA‑binding transcriptional dual regulator SdiA |
| RA | 2,015,321 | T→C | L148L (TTG→CTG) | fliG → | flagellar motor switch protein FliG |
| RA | 2,045,291 | G→A | P118P (CCG→CCA) | yeeJ → | inverse autotransporter adhesin |
| RA | 2,087,633 | G→A | T209M (ACG→ATG) | yeeY ← | putative DNA‑binding transcriptional regulator YeeY |
| RA | 2,166,877 | C→T | H404Y (CAC→TAC) | yegQ → | putative peptidase YegQ |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,227,441 | A→G | pseudogene (1318/1436 nt) | mdtQ ← | putative multidrug resistance outer membrane protein MdtQ |
| RA | 2,273,000 | T→C | Y213H (TAC→CAC) | yejA → | putative oligopeptide ABC transporter periplasmic binding protein |
| RA | 2,446,579 | T→C | T299A (ACC→GCC) | aroC ← | chorismate synthase |
| RA | 2,462,889 | (C)9→8 | intergenic (+243/‑123) | fadL → / → yfdF | long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF |
| RA | 2,527,823 | T→C | V293A (GTG→GCG) | yfeH → | putative solute:Na(+) symporter |
| RA | 2,532,596 | T→C | V63A (GTT→GCT) | cysK → | O‑acetylserine sulfhydrylase A |
| RA | 2,536,991 | G→A | R83C (CGT→TGT) | pdxK ← | pyridoxal kinase I |
| RA | 2,546,759 | T→C | C29C (TGT→TGC) | murP → | N‑acetylmuramic acid‑specific PTS enzyme IICB component/anhydro‑N‑acetylmuramic acid transporter |
| RA | 2,585,922 | T→C | S64S (AGT→AGC) | narQ → | sensory histidine kinase NarQ |
| RA | 2,588,164 | G→A | P190P (CCG→CCA) | acrD → | multidrug efflux pump RND permease AcrD |
| RA | 2,735,510 | T→C | T168A (ACT→GCT) | rluD ← | 23S rRNA pseudouridine(1911/1915/1917) synthase |
| RA | 2,744,933 | T→C | Y136C (TAC→TGC) | trmD ← | tRNA m(1)G37 methyltransferase |
| RA | 2,760,492 | T→C | intergenic (+98/‑55) | yfjI → / → yfjJ | CP4‑57 prophage; protein YfjI/CP4‑57 prophage; protein YfjJ |
| RA | 2,782,804 | A→G | intergenic (‑78/+261) | ypjA ← / ← pinH | adhesin‑like autotransporter YpjA/putative invertase fragment |
| RA | 2,794,219 | T→C | intergenic (+204/‑34) | gabT → / → gabP | 4‑aminobutyrate aminotransferase GabT/4‑aminobutyrate:H(+) symporter |
| RA | 2,798,813 | A→G | intergenic (‑318/‑351) | stpA ← / → alaE | DNA‑binding transcriptional repressor StpA with RNA chaperone activity/L‑alanine exporter |
| RA | 2,811,134 | A→G | H122R (CAC→CGC) | mprA → | DNA‑binding transcriptional repressor MprA |
| RA | 2,821,878 | T→C | N45S (AAC→AGC) | alaS ← | alanine‑‑tRNA ligase/DNA‑binding transcriptional repressor |
| MC JC | 2,857,096 | Δ2,538 bp | coding (4‑2541/2562 nt) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,865,053 | (C)6→5 | intergenic (+41/‑48) | ygbM → / → ygbN | putative 2‑oxo‑tetronate isomerase YgbM/putative transporter YgbN |
| RA | 2,927,799 | T→C | intergenic (+127/‑430) | ppnN → / → sdaC | nucleotide 5'‑monophosphate nucleosidase/serine:H(+) symporter SdaC |
| RA | 2,942,901 | (T)8→7 | intergenic (+1/+17) | gcvB → / ← ygdI | small regulatory RNA GcvB/DUF903 domain‑containing lipoprotein YgdI |
| RA | 2,949,993 | (T)5→6 | coding (752/1332 nt) | argA → | N‑acetylglutamate synthase |
| RA | 2,977,716 | A→G | V395A (GTT→GCT) | lysA ← | diaminopimelate decarboxylase |
| RA | 2,993,351 | C→T | P420S (CCT→TCT) | ygeH → | putative transcriptional regulator YgeH |
| RA | 3,028,144 | A→G | T342A (ACC→GCC) | ghxQ → | guanine/hypoxanthine transporter GhxQ |
| RA | 3,059,205 | T→C | T41A (ACA→GCA) | rpiA ← | ribose‑5‑phosphate isomerase A |
| RA | 3,068,157 | T→C | intergenic (‑77/+16) | yggE ← / ← argO | uncharacterized protein YggE/L‑arginine exporter |
| RA | 3,080,992 | T→C | D215G (GAC→GGC) | tktA ← | transketolase 1 |
| RA | 3,153,184 | A→G | K317E (AAA→GAA) | metC → | cystathionine beta‑lyase/L‑cysteine desulfhydrase |
| RA | 3,240,945 | T→C | A334A (GCT→GCC) | sstT → | serine/threonine:Na(+) symporter |
| RA | 3,287,400 | T→C | intergenic (+375/‑26) | agaI → / → yraH | putative deaminase AgaI/putative fimbrial protein YraH |
| RA | 3,297,389 | (G)5→6 | coding (750/1041 nt) | yraQ ← | permease family protein YraQ |
| RA | 3,334,125 | T→C | V139A (GTA→GCA) | ispB → | all‑trans‑octaprenyl‑diphosphate synthase |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,375,556 | C→T | Q230* (CAG→TAG) | dcuD → | putative transporter DcuD |
| RA | 3,388,726 | A→G | V134A (GTT→GCT) | aaeA ← | aromatic carboxylic acid efflux pump membrane fusion protein |
| RA | 3,397,734 | C→T | G21D (GGC→GAC) | rng ← | RNase G |
| RA | 3,403,827 | G→A | G115E (GGG→GAG) | yhdH → | acrylyl‑CoA reductase |
| RA | 3,445,283 | T→C | A105A (GCA→GCG) | rplR ← | 50S ribosomal subunit protein L18 |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,613,291 | T→C | V108A (GTA→GCA) | acpT → | holo‑[acyl carrier protein] synthase 2 |
| RA | 3,795,090 | T→C | A54A (GCT→GCC) | waaF → | ADP‑heptose‑‑LPS heptosyltransferase 2 |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,860,630 | (C)5→4 | coding (348/894 nt) | yidL → | putative DNA‑binding transcriptional regulator YidL |
| RA | 3,884,188 | T→C | intergenic (+82/‑148) | ysdD → / → rpmH | protein YsdD/50S ribosomal subunit protein L34 |
| RA | 3,934,828 | A→G | M351V (ATG→GTG) | rbsA → | ribose ABC transporter ATP binding subunit |
| RA | 4,019,831 | A→G | T70A (ACC→GCC) | ubiJ → | ubiquinone biosynthesis accessory factor UbiJ |
| RA | 4,152,699 | C→T | V134I (GTC→ATC) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,295,029 | A→G | E183E (GAA→GAG) | gltP → | glutamate/aspartate : H(+) symporter GltP |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,304,147 | A→G | F86S (TTC→TCC) | ytcA ← | putative lipoprotein YtcA |
| MC | 4,326,086 | Δ100 bp | between other | yjdN ← / ← yjdM | conserved protein YjdN/conserved protein YjdM |
| RA | 4,361,448 | (A)8→7 | coding (487/1539 nt) | cadC ← | DNA‑binding transcriptional activator CadC |
| RA | 4,377,043 | A→G | T57A (ACG→GCG) | gdx → | guanidinium exporter |
| RA | 4,391,437 | A→G | S25P (TCT→CCT) | rsgA ← | ribosome small subunit‑dependent GTPase A |
| RA | 4,417,416 | A→G | I155M (ATA→ATG) | yjfP → | carboxylesterase |
| RA | 4,426,751 | A→G | G224G (GGT→GGC) | yjfZ ← | protein YjfZ |
| RA | 4,433,902 | C→T | L41L (CTG→CTA) | qorB ← | NAD(P)H:quinone oxidoreductase |
| RA | 4,445,549 | A→G | T480A (ACC→GCC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,466,573 | A→G | V225A (GTT→GCT) | treR ← | DNA‑binding transcriptional repressor TreR |
| RA | 4,539,762 | A→G | intergenic (‑261/‑1195) | nanC ← / → fimB | N‑acetylneuraminic acid outer membrane channel/regulator for fimA |
| RA | 4,606,215 | (G)8→9 | noncoding (72/87 nt) | leuP ← | tRNA‑Leu |
| RA | 4,639,212 | A→G | E345E (GAA→GAG) | creD → | putative inner membrane protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 84019 | 84151 | 133 | 30 [29] | [29] 30 | leuL/leuO | leu operon leader peptide/DNA‑binding transcriptional dual regulator LeuO |
| * | * | ÷ | NC_000913 | 1806194 | 1806365 | 172 | 32 [27] | [28] 30 | ydiY/pfkB | acid‑inducible putative outer membrane protein YdiY/6‑phosphofructokinase II |
| * | * | ÷ | NC_000913 | 2033785 | 2033975 | 191 | 33 [29] | [27] 30 | rseX/yedS | small regulatory RNA RseX/putative outer membrane protein YedS, N‑terminal fragment |
| * | * | ÷ | NC_000913 | 2249608 | 2249711 | 104 | 33 [29] | [24] 30 | [yeiE] | [yeiE] |
| * | * | ÷ | NC_000913 | 3413534 | 3413663 | 130 | 30 [29] | [29] 30 | envR/acrE | DNA‑binding transcriptional repressor EnvR/multidrug efflux pump membrane fusion lipoprotein AcrE |
| * | * | ÷ | NC_000913 | 3423770–3424234 | 3424558–3424238 | 5–789 | 34 [24] | [28] 40 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 3751874 | 3752017 | 144 | 30 [29] | [29] 35 | [yiaU] | [yiaU] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 30 (0.330) | 67 (0.830) | 38/246 | 0.8 | 75.9% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 16 (0.200) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 30 (0.330) | 54 (0.670) | 40/246 | 0.6 | 71.8% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 16 (0.200) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 48 (0.540) | 32/270 | 1.5 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 106 (1.160) | 140 (1.540) | 73/276 | 0.0 | 72.1% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 3 (0.030) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 100 (1.090) | 55/278 | 0.3 | 97.1% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 3 (0.030) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||