Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 292,395 T→C Y185C (TAC→TGC)  yagK ← CP4‑6 prophage; uncharacterized protein YagK

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913292,3950TC100.0% 510.5 / NA 137Y185C (TAC→TGC) yagKCP4‑6 prophage; uncharacterized protein YagK
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (65/72);  total (65/72)

Only 100 of 142 total aligned reads displayed.

CATTTTAGTAATTTTTTGAAACAATACAAATAAGGCCTTCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGTAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGTGATCGTCTCTCTCCAGTCTCAGGGCGCTGTACCA  >  NC_000913/292259‑292531
                                                                                                                                        |                                                                                                                                        
cATTTTAGTAATTTTTTGAAACAATACAAATAAGGCCTTCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGt                                                                                                                                       >  1:768684/1‑140 (MQ=255)
cATTTTAGTAATTTTTTGAAACAATACAAATAAGGCCTTCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGt                                                                                                                                       >  1:119618/1‑140 (MQ=255)
cATTTTAGTAATTTTTTGAAACAATACAAATAAGGCCTTCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGt                                                                                                                                       <  1:1302950/140‑1 (MQ=255)
cATTTTAGTAATTTTTTGAAACAATACAAATAAGGCCTTCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGt                                                                                                                                       >  2:1543200/1‑140 (MQ=255)
     tAGTAATTTTTTGAAACAATACAAATAAGGCCTTCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGt                                                                                                                                  >  1:777264/1‑140 (MQ=255)
     tAGTAATTTTTTGAAACAATACAAATAAGGCCTTCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGt                                                                                                                                  <  1:855489/140‑1 (MQ=255)
        tAATTTTTTGAAACAATACAAATAAGGCCTTCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCgg                                                                                                                               >  2:1036068/1‑140 (MQ=255)
                tGAAACAATACAAATAAGGCCTTCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAg                                                                                                                       <  1:12407/140‑1 (MQ=255)
                    aCAATACAAATAAGGCCTTCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGcc                                                                                                                   <  1:418920/140‑1 (MQ=255)
                       aTACAAATAAGGCCTTCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTgg                                                                                                                <  2:75095/140‑1 (MQ=255)
                             aTAAGGCCTTCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTc                                                                                                          >  2:1081265/1‑140 (MQ=255)
                                aGGCCTTCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTctgc                                                                                                       >  2:836167/1‑140 (MQ=255)
                                  gCCTTCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTctgctg                                                                                                     >  1:411377/1‑140 (MQ=255)
                                  gCCTTCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTctgctg                                                                                                     >  1:35133/1‑140 (MQ=255)
                                  gCCTTCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTctgctg                                                                                                     >  1:309607/1‑140 (MQ=255)
                                  gCCTTCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTctgctg                                                                                                     >  2:377824/1‑140 (MQ=255)
                                    cTTCTCACTGAGATGGCCAGTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTTGa                                                                                                   >  2:1149872/1‑140 (MQ=255)
                                     ttCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGaa                                                                                                  <  2:1490750/140‑1 (MQ=255)
                                     ttCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGaa                                                                                                  >  2:420741/1‑140 (MQ=255)
                                       ctcACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAGCTTTGGTCAGGCAGTCCAGTCGGTTTAACAGCGCCTGGTAGTTCTGCGCGAAGt                                                                                                >  2:1203910/1‑140 (MQ=255)
                                       ctcACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGt                                                                                                <  2:777264/140‑1 (MQ=255)
                                       ctcACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGt                                                                                                <  1:383195/140‑1 (MQ=255)
                                          aCTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAg                                                                                             <  2:516278/140‑1 (MQ=255)
                                           cTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTTGTAGTTCTGCTGGAAGTCAGt                                                                                            <  1:1374857/140‑1 (MQ=255)
                                            tGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTa                                                                                           >  1:246548/1‑140 (MQ=255)
                                              agaAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACt                                                                                         >  2:148139/1‑140 (MQ=255)
                                                aaGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTAt                                                                                       >  1:201011/1‑140 (MQ=255)
                                                aaGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTAt                                                                                       <  2:204980/140‑1 (MQ=255)
                                                aaGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTAt                                                                                       >  2:659352/1‑140 (MQ=255)
                                                  ggCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGATTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTg                                                                                     >  1:702317/1‑140 (MQ=255)
                                                   gCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTgg                                                                                    >  1:50956/1‑140 (MQ=255)
                                                   gCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTgg                                                                                    >  2:185415/1‑140 (MQ=255)
                                                    ccATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGgt                                                                                   >  2:838668/1‑140 (MQ=255)
                                                    ccATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGgt                                                                                   >  2:95840/1‑140 (MQ=255)
                                                    ccATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGgt                                                                                   <  1:1282042/140‑1 (MQ=255)
                                                    ccATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGgt                                                                                   <  1:314921/140‑1 (MQ=255)
                                                      aTTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGgtgt                                                                                 <  1:452835/140‑1 (MQ=255)
                                                      aTTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGgtgt                                                                                 >  1:310856/1‑140 (MQ=255)
                                                       ttACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTc                                                                                <  2:1260873/140‑1 (MQ=255)
                                                        tACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCt                                                                               >  2:734008/1‑140 (MQ=255)
                                                        tACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCt                                                                               >  1:914607/1‑140 (MQ=255)
                                                        tACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCt                                                                               >  1:847746/1‑140 (MQ=255)
                                                            gACTTACAGTTGGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTTCTATTGGTGTCTAGca                                                                           <  2:231561/140‑1 (MQ=255)
                                                            gACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGca                                                                           <  1:1103408/140‑1 (MQ=255)
                                                             aCTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGcac                                                                          >  2:400929/1‑140 (MQ=255)
                                                             aCTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGcac                                                                          >  2:30678/1‑140 (MQ=255)
                                                             aCTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGcac                                                                          >  1:636214/1‑140 (MQ=255)
                                                             aCTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGcac                                                                          >  2:1013272/1‑140 (MQ=255)
                                                              cTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGcaca                                                                         <  2:542208/140‑1 (MQ=255)
                                                               ttACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACAt                                                                        <  2:1542787/140‑1 (MQ=255)
                                                               ttACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCCCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACAt                                                                        <  2:319336/140‑1 (MQ=255)
                                                                 aCAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATAc                                                                      >  2:1200377/1‑140 (MQ=255)
                                                                  cAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGCCCAGCACATACt                                                                     >  2:1366767/1‑140 (MQ=255)
                                                                    gTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTa                                                                   <  2:1003853/140‑1 (MQ=255)
                                                                    gTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTa                                                                   <  1:420741/140‑1 (MQ=255)
                                                                    gTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTa                                                                   <  2:119618/140‑1 (MQ=255)
                                                                     ttCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTAc                                                                  >  1:1021185/1‑140 (MQ=255)
                                                                      tCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACa                                                                 <  1:1203910/140‑1 (MQ=255)
                                                                       cGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAg                                                                >  1:1513862/1‑140 (MQ=255)
                                                                       cGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAg                                                                >  1:1529913/1‑140 (MQ=255)
                                                                       cGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGGCAGGCAGTCCAGCCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAg                                                                >  2:357585/1‑140 (MQ=255)
                                                                         aTTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGtt                                                              >  2:858917/1‑140 (MQ=255)
                                                                          tttGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGttt                                                             >  2:785755/1‑140 (MQ=255)
                                                                             ggCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCa                                                          >  2:336399/1‑140 (MQ=255)
                                                                              gCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAg                                                         <  2:35133/140‑1 (MQ=255)
                                                                                      cGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTA‑TGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGga                                                <  1:152940/140‑1 (MQ=255)
                                                                                       gAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTTGCACATACTTACAGTTTTCAGGAAAATGga                                                <  2:694051/140‑1 (MQ=255)
                                                                                       gAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATggt                                                <  2:898879/140‑2 (MQ=255)
                                                                                       gAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGga                                                <  2:574375/140‑1 (MQ=255)
                                                                                       gAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGga                                                <  2:1146189/140‑1 (MQ=255)
                                                                                       gAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGga                                                <  1:37335/140‑1 (MQ=255)
                                                                                        aaGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGgac                                               <  1:1036068/140‑1 (MQ=255)
                                                                                        aaGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGgac                                               <  2:503399/140‑1 (MQ=255)
                                                                                        aaGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGgac                                               <  2:914607/140‑1 (MQ=255)
                                                                                         aGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGgacc                                              <  1:1391858/140‑1 (MQ=255)
                                                                                             aCGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGgaccagac                                          >  1:636684/1‑140 (MQ=255)
                                                                                               ggTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGgaccagacca                                        >  1:240588/1‑140 (MQ=255)
                                                                                                  ctcCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAggg                                     >  1:201121/1‑140 (MQ=255)
                                                                                                   tcCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAgggg                                    >  1:895844/1‑139 (MQ=255)
                                                                                                   tcCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGt                                    >  2:570467/1‑140 (MQ=255)
                                                                                                   tcCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGt                                    >  1:1136304/1‑140 (MQ=255)
                                                                                                   tcCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGt                                    >  2:298566/1‑140 (MQ=255)
                                                                                                      ttCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGGAATTGGACCAGACCAGGGTGAt                                 <  2:201011/140‑1 (MQ=255)
                                                                                                      ttCACCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGTGAt                                 <  2:310856/140‑1 (MQ=255)
                                                                                                         aCCAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGTGATCGt                              >  1:1507582/1‑140 (MQ=255)
                                                                                                           cAAACACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGTGATCGtct                            >  2:901326/1‑140 (MQ=255)
                                                                                                             aaCACTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGTGATCGtctct                          >  2:1095479/1‑140 (MQ=255)
                                                                                                                acTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGTGATCGtctctctc                       <  1:619053/140‑1 (MQ=255)
                                                                                                                 cTTTGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGTGATCGTCTCTCTcc                      <  2:246548/140‑1 (MQ=255)
                                                                                                                    tGCTTTCAACTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGTGATCGTCTCTCTCCAGt                   >  1:440298/1‑140 (MQ=255)
                                                                                                                            aCTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGTGATCGTCTCTCTCCAGTCTCAGGgc           >  1:1355208/1‑140 (MQ=255)
                                                                                                                            aCTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGTGATCGTCTCTCTCCAGTCTCAGGgc           <  2:1517751/140‑1 (MQ=255)
                                                                                                                             cTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGTGATCGTCTCTCTCCAGTCTCAGGgcg          <  2:534370/140‑1 (MQ=255)
                                                                                                                             cTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGTGATCGTCTCTCTCCAGTCTCAGGgcg          <  1:1543200/140‑1 (MQ=255)
                                                                                                                             cTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGTGATCGTCTCTCTCCAGTCTCAGGgcg          <  1:838668/140‑1 (MQ=255)
                                                                                                                             cTTTGGTCAGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGTGATCGTCTCTCTCCAGTCTCAGGgcg          <  1:690950/140‑1 (MQ=255)
                                                                                                                                     aGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGTGATCGTCTCTCTCCAGTCTCAGGGCGCTGTACCa  <  1:1200377/140‑1 (MQ=255)
                                                                                                                                     aGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGTGATCGTCTCTCTCCAGTCTCAGGGCGCTGTACCa  <  2:636214/140‑1 (MQ=255)
                                                                                                                                     aGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGTGATCGTCTCTCTCCAGTCTCAGGGCGCTGTACCa  <  1:1226631/140‑1 (MQ=255)
                                                                                                                                     aGGCAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGTGATCGTCTCTCTCCAGTCTCAGGGCGCTGTACCa  <  1:1013272/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
CATTTTAGTAATTTTTTGAAACAATACAAATAAGGCCTTCTCACTGAGAAGGCCATTACCGACTTACAGTTCGATTTGGCTACAGCCGAAGTTACGGTCTCCTTCACCAAACACTTTGCTTTCAACTTTGGTCAGGTAGTCCAGTCGGGTTAACAGCGCCTGGTAGTTCTGCTGGAAGTCAGTACTATTGGTGTCTAGCACATACTTACAGTTTTCAGGAAAATGGACCAGACCAGGGTGATCGTCTCTCTCCAGTCTCAGGGCGCTGTACCA  >  NC_000913/292259‑292531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑