Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,001,023	(A)8→7	coding (1808/2601 nt)	elfC →	putative fimbrial usher protein ElfC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,001,016	0	A	.	100.0%	412.6 / NA	94	coding (1801/2601 nt)	elfC	putative fimbrial usher protein ElfC
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (37/57);  total (37/57)

ATTAAAGATCTTTCGCTGGGGATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGGAAAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCGTGCAACAGGGATATAACAGC  >  NC_000913/1000878‑1001150                                                                                                                                           |                                                                                                                                       aTTAAAGATCTTTCGCTGGGGATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGGaa                                                                                                                                       >  1:1514019/1‑140 (MQ=255)    aaaGATCTTTCGCTGGGGATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGGaaaaa                                                                                                                                    >  1:662256/1‑140 (MQ=255)      aGATCTTTCGCTGGGGATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGGaaaaaaa                                                                                                                                  >  2:4247/1‑140 (MQ=255)           tttCGCTGGGGATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACg                                                                                                                            >  1:548476/1‑140 (MQ=255)           tttCGCTGGGGATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACg                                                                                                                            >  1:326829/1‑140 (MQ=255)             tCGCTGGGGATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGcc                                                                                                                          >  1:1229016/1‑140 (MQ=255)             tCGCTGGGGATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGcc                                                                                                                          >  1:1425443/1‑140 (MQ=255)                 tGGGGATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGa                                                                                                                      >  2:737576/1‑140 (MQ=255)                 tGGGGATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGa                                                                                                                      <  2:727133/140‑1 (MQ=255)                 tGGGGATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGa                                                                                                                      <  1:756955/140‑1 (MQ=255)                  ggggATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGAt                                                                                                                     <  2:1353075/140‑1 (MQ=255)                  ggggATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGAt                                                                                                                     <  1:1487775/140‑1 (MQ=255)                  ggggATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGAt                                                                                                                     <  1:1128407/140‑1 (MQ=255)                  ggggATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGAt                                                                                                                     <  2:1461356/140‑1 (MQ=255)                   gggATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATg                                                                                                                    >  1:1367148/1‑140 (MQ=255)                   gggATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATg                                                                                                                    <  1:92488/140‑1 (MQ=255)                    ggATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGa                                                                                                                   <  2:1502051/140‑1 (MQ=255)                    ggATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGa                                                                                                                   <  1:370321/140‑1 (MQ=255)                     gATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAA‑TTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGAcc                                                                                                                 <  1:946095/140‑1 (MQ=255)                      aTTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGAcc                                                                                                                 <  2:790339/140‑1 (MQ=255)                         tCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACctct                                                                                                              <  1:403539/140‑1 (MQ=255)                         tCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACctct                                                                                                              <  1:1098001/140‑1 (MQ=255)                         tCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACctct                                                                                                              <  1:270081/140‑1 (MQ=255)                             ggAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGTCCTCTAaca                                                                                                          >  2:917790/1‑140 (MQ=255)                             ggAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAaca                                                                                                          <  2:659132/140‑1 (MQ=255)                             ggAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAaca                                                                                                          >  1:881757/1‑140 (MQ=255)                               aaCTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACAcc                                                                                                        <  2:1529690/140‑1 (MQ=255)                                  tACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGt                                                                                                     >  2:1167379/1‑140 (MQ=255)                                    cAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTAt                                                                                                   <  2:1367148/140‑1 (MQ=255)                                       tAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGa                                                                                                <  2:662256/140‑1 (MQ=255)                                       tAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGa                                                                                                <  1:699437/140‑1 (MQ=255)                                       tAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGa                                                                                                <  1:11271/140‑1 (MQ=255)                                         aGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATa                                                                                              <  1:868424/140‑1 (MQ=255)                                         aGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATa                                                                                              >  2:992253/1‑140 (MQ=255)                                         aGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATa                                                                                              >  1:189610/1‑140 (MQ=255)                                         aGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATa                                                                                              >  1:1167760/1‑140 (MQ=255)                                         aGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATa                                                                                              >  1:1284019/1‑140 (MQ=255)                                           tCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAAc                                                                                            >  2:1123863/1‑140 (MQ=255)                                           tCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAAc                                                                                            <  2:1040648/140‑1 (MQ=255)                                            cccGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACg                                                                                           >  1:381391/1‑140 (MQ=255)                                              cGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGaa                                                                                         >  1:592351/1‑140 (MQ=255)                                              cGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGaa                                                                                         >  2:1506153/1‑140 (MQ=255)                                               gTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAg                                                                                        >  2:126989/1‑140 (MQ=255)                                                tGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAgg                                                                                       <  2:538966/140‑1 (MQ=255)                                                   tCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGca                                                                                    <  1:1380011/140‑1 (MQ=255)                                                     aaCCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGcaca                                                                                  <  2:177637/140‑1 (MQ=255)                                                     aaCCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGcaca                                                                                  <  2:1425443/140‑1 (MQ=255)                                                     aaCCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGcaca                                                                                  <  2:518288/140‑1 (MQ=255)                                                       ccTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACt                                                                                >  2:711815/1‑140 (MQ=255)                                                           aTGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTacac                                                                            <  2:951382/140‑1 (MQ=255)                                                            tGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTAcaca                                                                           >  2:536569/1‑140 (MQ=255)                                                                 aTCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAAcc                                                                      >  2:501690/1‑140 (MQ=255)                                                                 aTCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAAcc                                                                      >  1:482986/1‑140 (MQ=255)                                                                 aTCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAAcc                                                                      >  1:1461171/1‑140 (MQ=255)                                                                  tCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCt                                                                     <  1:126989/140‑1 (MQ=255)                                                                      gtgtTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGt                                                                 >  2:1329733/1‑140 (MQ=255)                                                                      gtgtTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGt                                                                 <  2:495334/140‑1 (MQ=255)                                                                      gtgtTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGt                                                                 <  1:1121777/140‑1 (MQ=255)                                                                      gtgtTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGt                                                                 <  2:1049444/140‑1 (MQ=255)                                                                      gtgtTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGt                                                                 <  2:881757/140‑1 (MQ=255)                                                                          ttGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTGATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTaa                                                             <  1:60363/140‑1 (MQ=255)                                                                           tGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAAc                                                            <  1:1506153/140‑1 (MQ=255)                                                                           tGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAAc                                                            >  1:470669/1‑140 (MQ=255)                                                                            gCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACg                                                           <  2:1167760/140‑1 (MQ=255)                                                                                  aaTTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACGCCAGTATCGATAACGAAGGGCACACTACGCAAAACCTGGGTTTAACGGAGACa                                                     <  2:563112/140‑1 (MQ=255)                                                                                          ccTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGa                                             <  1:777033/140‑1 (MQ=255)                                                                                            tGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATg                                           >  2:504597/1‑140 (MQ=255)                                                                                            tGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATg                                           >  2:589876/1‑140 (MQ=255)                                                                                            tGCCGCTCAATCTGTTCCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATg                                           >  2:707239/1‑140 (MQ=255)                                                                                               cGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACg                                        <  1:4247/140‑1 (MQ=255)                                                                                                  tCAATCTGTTGCTCTCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTa                                     <  1:1232314/140‑1 (MQ=255)                                                                                                    aaTCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAAc                                   <  2:326829/140‑1 (MQ=255)                                                                                                    aaTCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAAc                                   <  2:189610/140‑1 (MQ=255)                                                                                                    aaTCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAAc                                   <  1:737576/140‑1 (MQ=255)                                                                                                    aaTCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAAc                                   <  1:917790/140‑1 (MQ=255)                                                                                                    aaTCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAAc                                   <  2:1284019/140‑1 (MQ=255)                                                                                                            gCTCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTa                           <  2:592351/140‑1 (MQ=255)                                                                                                              tCCCCAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACa                         <  1:116590/140‑1 (MQ=255)                                                                                                                cccAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGc                       >  1:1130802/1‑140 (MQ=255)                                                                                                                 ccAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCg                      <  1:1167379/140‑1 (MQ=255)                                                                                                                 ccAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCg                      <  1:558463/140‑1 (MQ=255)                                                                                                                 ccAGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCg                      <  1:46624/140‑1 (MQ=255)                                                                                                                   aGAAGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCGTg                    <  2:470669/140‑1 (MQ=255)                                                                                                                    gAAGTAATGATAGCTATACCAGG‑AAAAAAATTGCGCCTGGATGTCCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCGTGc                   <  1:1293796/140‑1 (MQ=255)                                                                                                                      aGTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCGTGCaa                 <  2:1510632/140‑1 (MQ=255)                                                                                                                       gTAATGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCGTGCAAc                <  1:536569/140‑1 (MQ=255)                                                                                                                          aTGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCGTGCAACAgg             >  1:509553/1‑140 (MQ=255)                                                                                                                          aTGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCGTGCAACAgg             >  2:681013/1‑140 (MQ=255)                                                                                                                          aTGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCGTGCAACAgg             >  1:780563/1‑140 (MQ=255)                                                                                                                           tGATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCGTGCAACAggg            <  2:548476/140‑1 (MQ=255)                                                                                                                            gATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCGTGCAACAGGGa           <  2:482986/140‑1 (MQ=255)                                                                                                                            gATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCGTGCAACAGGGa           <  1:711815/140‑1 (MQ=255)                                                                                                                            gATAGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCGTGCAACAGGGa           <  2:381391/140‑1 (MQ=255)                                                                                                                               aGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCGTGCAACAGGGatat        >  2:1493879/1‑140 (MQ=255)                                                                                                                               aGCTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCGTGCAACAGGGatat        >  2:710772/1‑140 (MQ=255)                                                                                                                                 cTATACCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCGTGCAACAGGGATATaa      >  1:32189/1‑140 (MQ=255)                                                                                                                                    taCCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCGTGCAACAGGGATATAACAg   >  1:1416083/1‑140 (MQ=255)                                                                                                                                     aCCAGG‑AAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCGTGCAACAGGGATATAACAGc  >  2:37716/1‑140 (MQ=255)                                                                                                                                           |                                                                                                                                       ATTAAAGATCTTTCGCTGGGGATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGGAAAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCGATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACATTACTCGATGACGGTAACCTGAGCTACAGCGTGCAACAGGGATATAACAGC  >  NC_000913/1000878‑1001150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑