Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 287,576 A→G Y263C (TAC→TGC)  yagH → CP4‑6 prophage; putative xylosidase/arabinosidase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913287,5760AG100.0% 207.8 / NA 56Y263C (TAC→TGC) yagHCP4‑6 prophage; putative xylosidase/arabinosidase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (29/27);  total (29/27)

CAAAAATATCGACGGGCCGTACGAGCTGCACCCGGACGTAACGATGATGACCAGCTGGCACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTACCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCGTACGTGGAAGGCGG  >  NC_000913/287439‑287711
                                                                                                                                         |                                                                                                                                       
cAAAAATATCGACGGGCCGTACGAGCTGCACCCGGACGTAACGATGATGACCAGCTGGCACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGcc                                                                                                                                       >  1:945020/1‑140 (MQ=255)
          gACGGGCCGTACGAGCTGCACCCGGACGTAACGATGATGACCAGCTGGCACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAgccg                                                                                                                             <  1:1315379/140‑1 (MQ=255)
               gCCGTACGAGCTGCACCCGGACGTAACGATGATGACCAGCTGGCACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGccgcccgc                                                                                                                        >  2:1209061/1‑140 (MQ=255)
               gCCGTACGAGCTGCACCCGGACGTAACGATGATGACCAGCTGGCACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACAT‑GCCTGCCTCACCAGCCGCCCGCt                                                                                                                       >  1:365127/1‑140 (MQ=255)
                           gCACCCGGACGTAACGATGATGACCAGCTGGCACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCg                                                                                                            <  2:377714/140‑1 (MQ=255)
                           gCACCCGGACGTAACGATGATGACCAGCTGGCACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCg                                                                                                            <  1:245887/140‑1 (MQ=255)
                              cccGGACGTAACGATGATGACCAGCTGGCACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCg                                                                                                         <  2:1444506/140‑1 (MQ=255)
                               ccGGACGTAACGATGATGACCAGCTGGCACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGt                                                                                                        >  1:990863/1‑140 (MQ=255)
                                 ggACGTAACGATGATGACCAGCTGGCACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGc                                                                                                      <  1:1272266/140‑1 (MQ=255)
                                 ggACGAAACGATGATGACCAGCTGGCACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGc                                                                                                      <  2:854047/140‑1 (MQ=255)
                                  gACGTAACGATGATGACCAGCTGGCACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGcc                                                                                                     >  1:287794/1‑140 (MQ=255)
                                      tAACGATGATGACCAGCTGGCACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCgctg                                                                                                 <  2:988281/140‑1 (MQ=255)
                                      tAACGATGATGACCAGCTGGCACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCgctg                                                                                                 <  1:1487675/140‑1 (MQ=255)
                                            tgatgaCCAGCTGGCACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGcc                                                                                           <  1:902971/140‑1 (MQ=255)
                                                   cAGCTGGCACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCcggcg                                                                                    <  1:639979/140‑1 (MQ=255)
                                                     gCTGGCACCTGTCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGa                                                                                  <  1:701998/140‑1 (MQ=255)
                                                     gCTGGCACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGa                                                                                  >  2:47087/1‑140 (MQ=255)
                                                     gCTGGCACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGa                                                                                  <  2:417513/140‑1 (MQ=255)
                                                          cACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCgg                                                                             >  2:1147576/1‑140 (MQ=255)
                                                          cACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCgg                                                                             >  1:665535/1‑140 (MQ=255)
                                                           aCCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGc                                                                            <  2:926411/140‑1 (MQ=255)
                                                           aCCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGc                                                                            <  2:1146274/140‑1 (MQ=255)
                                                                ccGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTg                                                                       >  1:1404053/1‑140 (MQ=255)
                                                                ccGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTg                                                                       >  2:1011166/1‑140 (MQ=255)
                                                                ccGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTg                                                                       >  2:1267820/1‑140 (MQ=255)
                                                                ccGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTg                                                                       >  2:322566/1‑140 (MQ=255)
                                                                ccGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTg                                                                       >  2:1452914/1‑140 (MQ=255)
                                                                     gaACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGc                                                                  <  2:117030/140‑1 (MQ=255)
                                                                       aCCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTg                                                                >  2:1172066/1‑140 (MQ=255)
                                                                           gCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGgc                                                            >  1:287195/1‑140 (MQ=255)
                                                                                       cGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCa                                                >  2:465213/1‑140 (MQ=255)
                                                                                         gCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATc                                              >  1:465264/1‑140 (MQ=255)
                                                                                           cACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGc                                            <  2:163616/140‑1 (MQ=255)
                                                                                           cACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGc                                            <  2:458669/140‑1 (MQ=255)
                                                                                           cACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGc                                            <  1:1477637/140‑1 (MQ=255)
                                                                                            aCGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGcc                                           >  1:1353240/1‑140 (MQ=255)
                                                                                                cTCGCTGCTGCAGACGCATACGGGAGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCTGGCGCGCCGGTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGAGAGACCGGCATCGCCCGCa                                       <  2:895577/140‑1 (MQ=255)
                                                                                                                cATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACgg                       <  1:1271421/140‑1 (MQ=255)
                                                                                                                cATACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACgg                       <  1:36651/140‑1 (MQ=255)
                                                                                                                 aTACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGc                      >  1:614676/1‑140 (MQ=255)
                                                                                                                 aTACGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGc                      >  2:1043582/1‑140 (MQ=255)
                                                                                                                    cGGGTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTgg                   <  1:347026/140‑1 (MQ=255)
                                                                                                                     gggTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGc                  <  1:1011166/140‑1 (MQ=255)
                                                                                                                      ggTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGcc                 <  1:1147576/140‑1 (MQ=255)
                                                                                                                      ggTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGcc                 <  1:47087/140‑1 (MQ=255)
                                                                                                                       gTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCg                <  1:1452914/140‑1 (MQ=255)
                                                                                                                       gTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCg                >  2:1495193/1‑140 (MQ=255)
                                                                                                                       gTGAATGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCg                >  1:48380/1‑140 (MQ=255)
                                                                                                                          aaTGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCGTAc             >  2:371987/1‑140 (MQ=255)
                                                                                                                          aaTGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCGTAc             >  1:1275941/1‑140 (MQ=255)
                                                                                                                           aTGGTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCCGCGTCGCCCGCATTGAATTGCGCGACCGCTGGCCGTACg            >  2:1196848/1‑140 (MQ=255)
                                                                                                                             ggTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCGTACGTg          >  1:1390703/1‑140 (MQ=255)
                                                                                                                              gTACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCGTACGTgg         <  2:1513815/140‑1 (MQ=255)
                                                                                                                               tACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCGTACGTGGa        >  1:1254925/1‑140 (MQ=255)
                                                                                                                               tACATGGCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCGTACGTGGa        <  1:264931/140‑1 (MQ=255)
                                                                                                                                aCATGGCCTGCCTCACCAGCCGCCCGCTGTGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCGTACGTGGaa       >  2:1194310/1‑140 (MQ=255)
                                                                                                                                    ggCCTGCCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCGTACGTGGAAggcg   >  2:597533/1‑140 (MQ=255)
                                                                                                                                     gcctgcctCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCGTACGTGGAAggcgg  <  2:665535/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
CAAAAATATCGACGGGCCGTACGAGCTGCACCCGGACGTAACGATGATGACCAGCTGGCACCTGCCGGAGAACCCGCTGCAGAAGAGCGGCCACGGCTCGCTGCTGCAGACGCATACGGGTGAATGGTACATGGCCTACCTCACCAGCCGCCCGCTGCGCCTGCCCGGCGTGCCGCTGCTGGCCTCCGGCGGACGCGGCTACTGCCCGCTGGGGCGCGAGACCGGCATCGCCCGCATTGAATGGCGCGACGGCTGGCCGTACGTGGAAGGCGG  >  NC_000913/287439‑287711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑