| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 303,093 | (G)6→7 | coding (103/615 nt) | yagU → | inner membrane protein that contributes to acid resistance |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 303,087 | 1 | . | G | 99.2% | 483.7 / ‑3.7 | 132 | coding (97/615 nt) | yagU | inner membrane protein that contributes to acid resistance |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (69/62); total (70/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 | |||||||||||
Only 100 of 144 total aligned reads displayed.
TCCTGAAGAGGTGTATAACATAATGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑T‑GG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAATTGATTGCTCGCGTAATTTTCTCAATCCACCGTATATTT > NC_000913/302949‑303219 | tCCTGAAGAGGTGTATAACATAATGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑T‑g < 1:948025/140‑1 (MQ=255) agagGTGTATAACATAATGGTACAAGCAGGGTAGATACGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑T‑gg‑ggggg < 1:1230233/140‑2 (MQ=255) gagGTGTATAACATAATGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑T‑gg‑gggggc > 2:1113437/1‑138 (MQ=255) gtgtATAACATAATGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑T‑gg‑gggggctga > 2:958776/1‑135 (MQ=255) gtgtATAACATAATGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑T‑gg‑gggggctga > 2:38413/1‑135 (MQ=255) gtgtATAACATAATGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑T‑gg‑gggggctga > 2:1110803/1‑135 (MQ=255) gtATAACATAATGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAg > 2:977382/1‑140 (MQ=255) gtATAACATAATGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAg < 1:1381775/140‑1 (MQ=255) tataACATAATGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGt > 1:146825/1‑140 (MQ=255) cATAATGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCAt > 2:363583/1‑140 (MQ=255) tAATGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTg > 2:521490/1‑140 (MQ=255) aaTGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTTCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTgc > 2:842193/1‑140 (MQ=255) aaTGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTgc < 1:1093989/140‑1 (MQ=255) aaTGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTgc > 2:1443144/1‑140 (MQ=255) aaTGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTgc < 2:738501/140‑1 (MQ=255) aaTGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTgc > 2:1058929/1‑140 (MQ=255) tGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTgccg > 2:1224197/1‑140 (MQ=255) tGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTgccg < 1:1363092/140‑1 (MQ=255) tGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTgccg > 2:921959/1‑140 (MQ=255) tGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTgccg > 1:129905/1‑140 (MQ=255) gTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTgccgcc < 2:274460/140‑1 (MQ=255) tACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCa > 2:129977/1‑140 (MQ=255) caaacAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACg > 1:1508684/5‑140 (MQ=255) cAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACg > 2:1398686/1‑140 (MQ=255) cAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACg > 1:876007/1‑140 (MQ=255) cAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACg > 2:386736/1‑140 (MQ=255) gCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAg < 2:367586/140‑1 (MQ=255) gCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAg < 2:56523/140‑1 (MQ=255) gCAGGGGAGATAATAATAGATTTGAACAATCTCCTCCGAACCGCAGGCGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGGTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAg < 2:1515956/140‑1 (MQ=255) gggTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGccc < 2:323839/140‑1 (MQ=255) ggTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCg > 1:1172037/1‑140 (MQ=255) ggTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCg > 1:27636/1‑140 (MQ=255) ggTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCg > 2:1364446/1‑140 (MQ=255) gTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCgg < 2:236499/140‑1 (MQ=255) gTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCgg < 1:250587/140‑1 (MQ=255) atatGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTTGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTgccg < 1:978197/123‑1 (MQ=255) atatGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGa < 1:374617/140‑1 (MQ=255) tatGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGat < 1:286941/140‑1 (MQ=255) tatGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGat < 1:179605/140‑1 (MQ=255) tatGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGat < 1:373343/140‑1 (MQ=255) aaTATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGt > 2:893263/1‑140 (MQ=255) aaTATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGt > 2:1215966/1‑140 (MQ=255) aaTATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGt > 1:4718/1‑140 (MQ=255) aaTATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGt > 1:318049/1‑140 (MQ=255) aaTATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGt > 1:301636/1‑140 (MQ=255) atatatTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGtt < 1:897354/140‑1 (MQ=255) tatatTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGttt > 1:606912/1‑140 (MQ=255) tatatTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGttt > 1:1181838/1‑140 (MQ=255) atTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAAt > 2:1312641/1‑140 (MQ=255) tttGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATg < 2:273287/140‑1 (MQ=255) ttGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGc > 2:485111/1‑140 (MQ=255) ttGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGc > 2:1489212/1‑140 (MQ=255) ttGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGc > 1:1369759/1‑140 (MQ=255) tGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCa < 1:363583/140‑1 (MQ=255) gAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAg > 1:1083485/1‑140 (MQ=255) cAATCTCCTCTGAAGCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCGCGTAGCCCGGTGGATATGTTTAATGCAGCgt < 2:1059220/140‑1 (MQ=255) aCTCCACCGAACCGCAGACGTTATTGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGtgtg > 2:1139173/1‑140 (MQ=255) aCTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGtgtg > 2:238907/1‑140 (MQ=255) aCTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGtgtg > 2:781619/1‑140 (MQ=255) ccACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGcc < 1:38413/140‑1 (MQ=255) aCCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCg > 1:945223/1‑140 (MQ=255) ccGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCgg < 1:1360461/140‑1 (MQ=255) ccGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCgg < 1:1368318/140‑1 (MQ=255) ccGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCgg < 2:1277760/140‑1 (MQ=255) ccGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCgg < 2:765819/140‑1 (MQ=255) ccGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCgg < 1:346656/140‑1 (MQ=255) aaCCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCGCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAAt > 2:1041806/1‑140 (MQ=255) aCCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATc > 1:1450157/1‑140 (MQ=255) ccGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCGGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCa < 2:146825/140‑1 (MQ=255) ccGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCTACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCa < 2:834082/140‑1 (MQ=255) cGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCCTTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCAt > 2:705849/1‑140 (MQ=255) cGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCAt > 2:1199863/1‑140 (MQ=255) cGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCa < 1:623434/140‑1 (MQ=255) ttATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAgg > 1:418213/1‑140 (MQ=255) tATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAggg > 1:636740/1‑140 (MQ=255) gTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTgt < 1:1113437/140‑2 (MQ=255) gTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGc < 2:464412/140‑1 (MQ=255) gTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTCCCGCATTCGTGAAG‑T‑GGCGGGGCTGAAGTTCCATTGCCGCCCCGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGc < 2:553694/140‑1 (MQ=255) cTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAg < 2:315520/140‑1 (MQ=255) cTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAg < 2:606912/140‑1 (MQ=255) tgctgcATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGc > 1:747588/1‑140 (MQ=255) cattcattGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAat > 2:490963/1‑140 (MQ=255) ttcattGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAGCG‑GG‑GGGGCTGAAGTTCCAGTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGGGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAattg > 2:1543123/1‑140 (MQ=255) cattGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAattgat > 1:256188/1‑140 (MQ=255) ttGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAattgattg < 1:1224197/140‑1 (MQ=255) gCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAATTGATTGCTcg > 1:582231/1‑140 (MQ=255) cTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAATTGATTGCTcgc < 1:1139173/140‑1 (MQ=255) cTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAATTGATTGCTcgc > 2:490158/1‑140 (MQ=255) aTTGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAATTGATTGCTCGCGTa > 2:453839/1‑140 (MQ=255) tGCTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAATTGATTGCTCGCGTAAt < 1:910480/140‑1 (MQ=255) cTGGCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAATTGATTGCTCGCGTAAttt < 2:1309493/140‑1 (MQ=255) gCGTTGTTTCCGCATTCGTGAAG‑TGGG‑GGGGTTGAAGATCCATTGCGTCCACGTAGCCCGTGGGATATGTTTAATGCAGCGTGTGGCCGGAAATCATTAATCAGGGCTACAGGCGAAATAAATTGCTCGCTTAATTTtct > 2:361054/1‑140 (MQ=255) ttgttTCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAATTGATTGCTCGCGTAATTTTCTCaa > 2:768394/1‑140 (MQ=255) tttCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAATTGATTGCTCGCGTAATTTTCTCAATcc < 2:1508684/140‑1 (MQ=255) tttCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAATTGATTGCTCGCGTAATTTTCTCAATcc < 1:705849/140‑1 (MQ=255) ttCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAATTGATTGCTCGCGTAATTTTCTCAATCCa > 2:1344711/1‑140 (MQ=255) tCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCGCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAATTGATTGCTCGCGTAATTTTCTCAATCCAc < 1:1041806/140‑1 (MQ=255) tCCGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAATTGATTGCTCGCGTAATTTTCTCAATCCAc > 1:1395092/1‑140 (MQ=255) ccGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAATTGATTGCTCGCGTAATTTTCTCAATCCAcc < 1:386736/140‑1 (MQ=255) ccGCATTCGTGAAG‑TGGG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAATTGATTGCTCGCGTAATTTTCTCAATCCAcc < 1:421700/140‑1 (MQ=255) | TCCTGAAGAGGTGTATAACATAATGGTACAAGCAGGGTAGATATGAATATATTTGAACAAACTCCACCGAACCGCAGACGTTATGGTCTTGCTGCATTCATTGGGCTGATTGCTGGCGTTGTTTCCGCATTCGTGAAG‑T‑GG‑GGGGCTGAAGTTCCATTGCCGCCACGTAGCCCGGTGGATATGTTTAATGCAGCGTGTGGCCCGGAATCATTAATCAGGGCTGCAGGCCAAATTGATTGCTCGCGTAATTTTCTCAATCCACCGTATATTT > NC_000913/302949‑303219 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |