Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 1 1
12 1 1
13 1 1
14 1 1
15 1 1
16 1 1
17 1 1
18 1 1
19 1 1
20 1 1
21 1 1
22 1 1
23 1 1
24 1 1
25 1 1
26 1 1
27 1 1
28 1 1
29 1 1
30 1 1
31 1 1
32 1 1
33 1 1
34 1 1
35 1 1
36 1 1
37 1 1
38 1 1
39 1 1
40 1 1
41 1 1
42 1 1
43 1 1
44 1 1
45 1 1
46 1 1
46 46 46

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 275 555
Multiple Base Substitutions 4 5
Deletions 47 185
Insertions 22 158
Mobile Element Insertions 21 66
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 369 969

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F60 I1 R1 25 0 81.9 2792568 99.0% 2764642 138.9
A2 F60 I1 R1 57 0 32.8 3585168 30.6% 1097061 139.1
A3 F60 I1 R1 16 0 82.8 2804778 99.0% 2776730 138.8
A4 F60 I1 R1 16 0 67.4 2327836 99.0% 2304557 138.8
A5 F60 I1 R1 28 0 76.1 2586980 98.7% 2553349 138.7
A6 F60 I1 R1 20 0 59.2 2015288 99.1% 1997150 138.7
A7 F60 I1 R1 24 0 58.4 1980642 99.1% 1962816 138.6
A8 F60 I1 R1 12 0 60.0 2035914 99.2% 2019626 138.7
A9 F60 I1 R1 14 0 81.1 2782598 99.0% 2754772 138.9
A10 F60 I1 R1 20 0 70.4 2369960 99.0% 2346260 138.7
A11 F60 I1 R1 18 0 56.4 1905474 98.8% 1882608 138.7
A12 F60 I1 R1 26 0 61.7 2142986 98.8% 2117270 138.7
A13 F60 I1 R1 20 0 105.4 3566384 99.2% 3537852 138.6
A14 F60 I1 R1 19 0 68.3 2319574 99.0% 2296378 138.8
A15 F60 I1 R1 21 0 73.6 2482404 98.9% 2455097 138.6
A16 F60 I1 R1 19 0 72.5 2469168 99.0% 2444476 138.7
A17 F60 I1 R1 17 0 84.8 2859184 99.1% 2833451 138.5
A18 F60 I1 R1 16 0 127.0 4278976 99.0% 4236186 138.8
A19 F60 I1 R1 26 0 80.0 2686896 99.0% 2660027 138.5
A20 F60 I1 R1 14 0 57.6 1948010 98.8% 1924633 138.6
A21 F60 I1 R1 14 0 76.3 2570904 99.1% 2547765 138.5
A22 F60 I1 R1 20 0 69.2 2499260 99.0% 2474267 138.6
A23 F60 I1 R1 19 0 95.7 3243758 99.0% 3211320 138.6
A24 F60 I1 R1 49 0 40.6 4663232 29.3% 1366326 138.8
A25 F60 I1 R1 16 0 76.4 2573580 99.0% 2547844 138.6
A26 F60 I1 R1 21 0 96.6 3246002 99.1% 3216787 138.7
A27 F60 I1 R1 21 0 93.6 3197140 99.1% 3168365 138.7
A28 F60 I1 R1 18 0 114.4 3892502 99.2% 3861361 138.6
A29 F60 I1 R1 18 0 129.5 4415558 99.3% 4384649 138.7
A30 F60 I1 R1 21 0 56.2 1898164 99.0% 1879182 138.6
A31 F60 I1 R1 22 0 55.2 1900332 99.2% 1885129 138.7
A32 F60 I1 R1 21 0 108.7 3663738 99.2% 3634428 138.7
A33 F60 I1 R1 23 0 100.4 3424510 99.4% 3403962 139.0
A34 F60 I1 R1 22 0 82.1 2772604 99.2% 2750423 138.9
A35 F60 I1 R1 20 0 97.3 5307866 61.2% 3248413 139.2
A36 F60 I1 R1 17 0 84.5 3157446 99.1% 3129028 139.0
A37 F60 I1 R1 18 0 88.8 3012826 99.0% 2982697 139.0
A38 F60 I1 R1 17 0 92.6 3121444 99.1% 3093351 138.8
A39 F60 I1 R1 27 0 74.7 2598802 99.1% 2575412 138.6
A40 F60 I1 R1 18 0 90.9 3062178 99.0% 3031556 138.9
A41 F60 I1 R1 20 0 116.2 3960920 99.4% 3937154 139.1
A42 F60 I1 R1 18 0 77.5 2606276 98.8% 2575000 139.0
A43 F60 I1 R1 24 0 116.2 3919724 99.0% 3880526 138.7
A44 F60 I1 R1 21 0 92.3 3108414 99.1% 3080438 138.5
A45 F60 I1 R1 20 0 108.2 3627518 99.0% 3591242 138.8
A46 F60 I1 R1 16 0 103.9 3509570 99.0% 3474474 138.6

Mutation Needle Plot

Mutation Targets

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