mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 343,261 | G→T | L126L (CTG→CTT) | yahK → | aldehyde reductase, NADPH‑dependent |
| RA | 724,908 | C→T | L24L (CTG→CTA) | kdpC ← | K(+) transporting P‑type ATPase subunit KdpC |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,267,926 | A→T | T203S (ACC→TCC) | ychA → | transglutaminase‑like/TPR repeat‑containing protein |
| RA | 1,451,355 | A→T | intergenic (‑6/+242) | tynA ← / ← paaZ | copper‑containing amine oxidase/oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
| RA | 1,473,160 | Δ1 bp | pseudogene (2642/3495 nt) | ydbA → | putative outer membrane protein, N‑terminal fragment |
| RA | 1,721,915 | Δ1 bp | coding (652/858 nt) | ydhJ → | putative membrane fusion protein YdhJ |
| RA | 1,802,435 | C→A | D46Y (GAT→TAT) | thrS ← | threonine‑‑tRNA ligase |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,888,053 | C→A | intergenic (‑62/+8) | rnd ← / ← fadD | RNase D/fatty acyl‑CoA synthetase |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,227,228 | C→A | G15C (GGC→TGC) | yohF ← | putative oxidoreductase with NAD(P)‑binding Rossmann‑fold domain |
| RA | 2,564,480 | T→C | intergenic (+108/‑43) | yffR → / → yffS | CPZ‑55 prophage; uncharacterized protein YffR/CPZ‑55 prophage; uncharacterized protein YffS |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,958,515 | T→A | D182E (GAT→GAA) | ilvC → | ketol‑acid reductoisomerase (NADP(+)) |
| RA | 4,011,002 | C→T | intergenic (+2/‑74) | yigL → / → bioP | phosphosugar phosphatase YigL/biotin transporter |
| JC JC | 4,087,498 | IS5 (+) +4 bp | coding (497‑500/1056 nt) | yiiG → | DUF3829 domain‑containing lipoprotein YiiG |
| RA | 4,233,447 | T→G | intergenic (‑214/‑311) | lysC ← / → pgi | aspartate kinase III/glucose‑6‑phosphate isomerase |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196270 | 1211431 | 15162 | 22 [20] | [20] 21 | [icd]–[icdC] | [icd],ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,[icdC] |
| * | * | ÷ | NC_000913 | 3423770–3424234 | 3424525–3424238 | 5–756 | 21 [17] | [13] 28 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 84 (1.140) | 55/268 | 0.2 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 100 (1.310) | 114 (1.510) | 65/274 | 0.1 | 69.0% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 3 (0.040) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 83 (1.090) | 54/276 | 0.2 | 98.8% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 1 (0.010) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||