mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 442,961 | G→A | E471E (GAG→GAA) | thiI → | tRNA uridine 4‑sulfurtransferase |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,649,867 | T→G | V25G (GTT→GGT) | ydfD → | Qin prophage; lysis protein |
| RA | 1,802,309 | G→C | P88A (CCG→GCG) | thrS ← | threonine‑‑tRNA ligase |
| RA | 1,863,500 | A→G | T244A (ACC→GCC) | gapA → | glyceraldehyde‑3‑phosphate dehydrogenase A |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,616,162 | C→A | A23A (GCC→GCA) | bepA → | beta‑barrel assembly‑enhancing protease |
| RA | 2,653,971 | T→G | noncoding (117/304 nt) | ryfA → | small regulatory RNA RyfA |
| RA | 2,886,861 | T→C | Y120C (TAT→TGT) | cas3 ← | CRISPR‑associated endonuclease/helicase Cas3 |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,768,355 | C→T | S60L (TCA→TTA) | yibG → | tetratricopeptide‑like domain‑containing protein YibG |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,835,418 | T→C | N171S (AAT→AGT) | yicJ ← | putative xyloside transporter YicJ |
| RA | 3,847,546 | C→G | G360A (GGC→GCC) | uhpC ← | inner membrane protein sensing glucose‑6‑phosphate |
| RA | 4,279,622 | T→G | F382V (TTT→GTT) | ghxP → | guanine/hypoxanthine transporter GhxP |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196255 | 1211452 | 15198 | 26 [25] | [25] 26 | [icd]–[icdC] | [icd],ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,[icdC] |
| * | * | ÷ | NC_000913 | 2818134–2818141 | 2818259–2818201 | 61–126 | 26 [25] | [24] 28 | [argZ]–[argY] | [argZ],[argY] |
| * | * | ÷ | NC_000913 | 3423783–3424234 | 3424530–3424239 | 6–748 | 26 [25] | [24] 29 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3363001 = | 106 (1.290) | 135 (1.660) | 70/274 | 0.0 | 71.8% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 1 (0.010) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 87 (1.060) | 58/276 | 0.2 | 97.8% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 2 (0.020) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||