BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3363001 =	106 (1.290)	135 (1.660)	70/274	0.0	71.8%	coding (195/2382 nt)	yhcD	putative fimbrial usher protein YhcD
*	?	NC_000913	3766087 =	1 (0.010)	135 (1.660)	70/274	0.0	71.8%	coding (3905/4134 nt)	rhsA	rhs element protein RhsA

Only 100 of 245 total aligned reads displayed.

TGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362866‑3363140

ttagttcctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTaa                                                                                                                                          <  2:1364619‑M1/5‑1 (MQ=255)

     aTGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGc                                                                                                                                     >  2:878757/1‑140 (MQ=255)

        gTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaa                                                                                                                                  >  2:257305/1‑140 (MQ=255)

         tataGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTATATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaa                                                                                                                                 >  2:1107368/1‑140 (MQ=255)

              acgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGaaaaaaaa                                                                                                                            <  2:945944‑M1/19‑1 (MQ=255)

                gtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaaggtatcattgttatatctaAGTAAATGGCGAAAAAAAA‑gg                                                                                                                         >  1:857946‑M1/120‑140 (MQ=255)

                aTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATTGCGAAAAAAAA‑gg                                                                                                                         <  1:373596/140‑1 (MQ=255)

                  tGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCa                                                                                                                       >  1:738966/1‑140 (MQ=255)

                   gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCTGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCaa                                                                                                                      >  1:459691/1‑140 (MQ=255)

                   acatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacactatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCaa                                                                                                                      >  1:576086‑M1/117‑140 (MQ=255)

                       ctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACAtt                                                                                                                  <  2:205119‑M1/28‑1 (MQ=255)

                          ttGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCt                                                                                                               >  1:658037/1‑140 (MQ=255)

                               tttGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTAcgcg                                                                                                          <  2:355647/140‑1 (MQ=255)

                                 ttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCt                                                                                                        >  1:1020399‑M1/103‑140 (MQ=255)

                                    tcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTtg                                                                                                     <  1:1141682‑M1/41‑1 (MQ=255)

                                      ccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTtgat                                                                                                   >  1:161238‑M1/98‑140 (MQ=255)

                                        gAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTtgatga                                                                                                 >  1:800383/1‑140 (MQ=255)

                                            ctccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAAt                                                                                             >  2:372367‑M1/92‑140 (MQ=255)

                                                  aaTCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGAc                                                                                       >  1:718715/1‑140 (MQ=255)

                                                       gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                  <  1:10694‑M1/60‑1 (MQ=255)

                                                       gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                  <  2:1301221‑M1/60‑1 (MQ=255)

                                                         catttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTc                                                                                <  1:821852‑M1/62‑1 (MQ=255)

                                                         catttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTc                                                                                >  1:945944‑M1/79‑140 (MQ=255)

                                                             tattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGa                                                                            >  2:1141682‑M1/75‑140 (MQ=255)

                                                                 aTCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAg                                                                        >  2:528591/1‑140 (MQ=255)

                                                                 aTCCTAATATATCGCATTATTTTCCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAgg                                                                       >  1:1198390/1‑140 (MQ=255)

                                                                  tgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAgg                                                                       <  1:296213‑M1/71‑1 (MQ=255)

                                                                  tgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAgg                                                                       <  1:1271062‑M1/71‑1 (MQ=255)

                                                                   gtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGc                                                                      >  2:1271062‑M1/69‑140 (MQ=255)

                                                                     tAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAt                                                                    <  2:738966/140‑1 (MQ=255)

                                                                      attgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGa                                                                            <  2:1099848‑M1/66‑1 (MQ=255)

                                                                      attgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                   <  1:1291439‑M1/75‑1 (MQ=255)

                                                                        tatatCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTc                                                                 <  1:259158/140‑1 (MQ=255)

                                                                             cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:50563/1‑140 (MQ=255)

                                                                             cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:916615/1‑140 (MQ=255)

                                                                             cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:955728/1‑140 (MQ=255)

                                                                             cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:483165/1‑140 (MQ=255)

                                                                             cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:631320/1‑140 (MQ=255)

                                                                             cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:1303966/1‑140 (MQ=255)

                                                                             cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:509072/1‑140 (MQ=255)

                                                                                  tattTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       <  1:1320333/140‑1 (MQ=255)

                                                                                  tattTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       <  1:224975/140‑1 (MQ=255)

                                                                                   gttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGcc                                                      >  2:821852‑M1/53‑140 (MQ=255)

                                                                                   attTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGcc                                                      <  1:528591/140‑1 (MQ=255)

                                                                                      tttCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGt                                                   <  1:341923/140‑1 (MQ=255)

                                                                                      atccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGt                                                   <  2:868863‑M1/91‑1 (MQ=255)

                                                                                      atccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGt                                                   <  1:429693‑M1/91‑1 (MQ=255)

                                                                                        ccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGttt                                                 <  1:714383‑M1/93‑1 (MQ=255)

                                                                                         cccGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTa                                                <  1:1107368/140‑1 (MQ=255)

                                                                                         cccGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTa                                                >  2:627392/1‑140 (MQ=255)

                                                                                            gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCgg                                                    <  2:1337700‑M1/90‑1 (MQ=255)

                                                                                            gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  2:789250‑M1/97‑1 (MQ=255)

                                                                                            gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  2:1305256‑M1/97‑1 (MQ=255)

                                                                                            gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  2:860584‑M1/97‑1 (MQ=255)

                                                                                            gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  1:680714‑M1/97‑1 (MQ=255)

                                                                                             tgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaaa                                            <  1:1025564‑M1/98‑1 (MQ=255)

                                                                                                 tgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTcc                                        <  2:420176‑M1/102‑1 (MQ=255)

                                                                                                  gcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCt                                       >  2:1025564‑M1/38‑140 (MQ=255)

                                                                                                   ccGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCtt                                      <  2:1063742/140‑1 (MQ=255)

                                                                                                     acatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCt                                    >  2:296213‑M1/35‑140 (MQ=255)

                                                                                                         ttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaag                                >  2:239410‑M1/31‑140 (MQ=255)

                                                                                                              cgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGaaaaa                           <  1:416274‑M1/115‑1 (MQ=255)

                                                                                                                agaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGaaaaaaa                         >  2:1378486‑M1/24‑140 (MQ=255)

                                                                                                                   gAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATgg                      <  2:663378/140‑1 (MQ=255)

                                                                                                                   agctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATgg                      >  2:429693‑M1/21‑140 (MQ=255)

                                                                                                                       atcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  >  1:205119‑M1/17‑140 (MQ=255)

                                                                                                                       atTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  2:955728/140‑1 (MQ=255)

                                                                                                                         tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:307350/140‑1 (MQ=255)

                                                                                                                         tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:543683/140‑1 (MQ=255)

                                                                                                                         cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:557388‑M1/15‑140 (MQ=255)

                                                                                                                         cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:1018519‑M1/15‑140 (MQ=255)

                                                                                                                          attgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:1186585‑M1/126‑1 (MQ=255)

                                                                                                                          attgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:1186585‑M1/14‑139 (MQ=255)

                                                                                                                           ttgttatatctaAGTAAATGGCGAAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTAc               <  2:690563‑M1/128‑1 (MQ=255)

                                                                                                                           ttgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              <  1:854447‑M1/128‑1 (MQ=255)

                                                                                                                           aCTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAGAAAAATGGCTGTTa                <  2:1208924/138‑1 (MQ=255)

                                                                                                                           aCTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAGAAAAATGGCTGTTa                >  1:1208924/1‑138 (MQ=255)

                                                                                                                           aCTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  1:777122/1‑140 (MQ=255)

                                                                                                                           aCTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  1:1010094/1‑140 (MQ=255)

                                                                                                                           aCTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  2:555021/1‑140 (MQ=255)

                                                                                                                            tgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             >  1:814203‑M1/12‑140 (MQ=255)

                                                                                                                            tgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             <  2:695779‑M1/129‑1 (MQ=255)

                                                                                                                            tgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCAGTTACGa             <  1:690695‑M1/129‑1 (MQ=255)

                                                                                                                             gttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            >  1:876295‑M1/11‑140 (MQ=255)

                                                                                                                              ttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  2:680714‑M1/10‑140 (MQ=255)

                                                                                                                               tatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACta          <  2:115276‑M1/132‑1 (MQ=255)

                                                                                                                               tatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACta          <  1:1371060‑M1/132‑1 (MQ=255)

                                                                                                                                atatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtat         <  1:188510‑M1/133‑1 (MQ=255)

                                                                                                                                atatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  2:170902‑M1/131‑1 (MQ=255)

                                                                                                                                 aGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCt                    >  1:500717/1‑128 (MQ=255)

                                                                                                                                  atctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  2:1274558‑M1/6‑136 (MQ=255)

                                                                                                                                   tctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      >  2:714383‑M1/5‑140 (MQ=255)

                                                                                                                                   tctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      >  2:657390‑M1/5‑140 (MQ=255)

                                                                                                                                   tctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      >  1:1059417‑M1/5‑140 (MQ=255)

                                                                                                                                   tATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  2:8005/128‑1 (MQ=255)

                                                                                                                                    ctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:315802‑M1/4‑129 (MQ=255)

                                                                                                                                      aAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   <  1:1393184‑M1/139‑1 (MQ=255)

                                                                                                                                      aAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   <  2:890840‑M1/139‑1 (MQ=255)

                                                                                                                                       AGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  >  2:188510‑M1/1‑140 (MQ=255)

                                                                                                                                       AGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  1:39830‑M1/140‑1 (MQ=255)

TGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362866‑3363140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.