mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 50,988 | +CG | coding (235/843 nt) | apaH ← | diadenosine tetraphosphatase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| JC JC | 571,395 | IS5 (–) +4 bp | coding (503‑506/552 nt) | ybcL → | DLP12 prophage; periplasmic protein YbcL |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,071,509 | C→A | G86V (GGC→GTC) | rutD ← | putative aminoacrylate hydrolase |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| JC JC | 1,229,572 | IS5 (–) +4 bp | coding (820‑823/912 nt) | hlyE ← | hemolysin E |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| JC | 1,466,591 | Δ11 bp | pseudogene (1200‑1210/2518 nt) | ydbA → | putative outer membrane protein, N‑terminal fragment |
| JC JC | 1,596,403 | IS5 (+) +4 bp | pseudogene (1681‑1684/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,012,316 | C→T | pseudogene (36/1129 nt) | yedN ← | putative type III secreted effector, N‑terminal fragment |
| RA | 2,173,361 | +C | pseudogene (918/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| JC | 2,173,362 | Δ3 bp | pseudogene (915‑917/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,623,708 | C→T | A222V (GCC→GTC) | ppk → | polyphosphate kinase |
| RA | 2,963,333 | T→C | E128E (GAA→GAG) | ppdB ← | conserved protein PpdB |
| RA | 3,035,052 | A→G | R41R (CGT→CGC) | lysS ← | lysine‑‑tRNA ligase, constitutive |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,517,080 | T→G | D76A (GAT→GCT) | damX ← | cell division protein DamX |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196273 | 1211442 | 15170 | 16 [15] | [15] 16 | [icd]–[icdC] | [icd],ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,[icdC] |
| * | * | ÷ | NC_000913 | 3423755–3424234 | 3424525–3424239 | 6–771 | 20 [14] | [13] 18 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3363001 = | 81 (1.290) | 97 (1.560) | 60/274 | 0.0 | 70.2% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 2 (0.030) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 62 (0.990) | 38/276 | 0.5 | 98.4% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 1 (0.020) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||