Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,012,316	C→T	pseudogene (36/1129 nt)	yedN ←	putative type III secreted effector, N‑terminal fragment

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,012,316	0	C	T	100.0%	339.0 / NA	96	pseudogene (36/1129 nt)	yedN	putative type III secreted effector, N‑terminal fragment
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (46/50);  total (46/50)

TTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATG  >  NC_000913/2012180‑2012451                                                                                                                                         |                                                                                                                                        ttGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGa                                                                                                                                      >  2:846862/1‑140 (MQ=255) ttGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGa                                                                                                                                      >  1:545427/1‑140 (MQ=255) ttGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGa                                                                                                                                      >  2:956824/1‑140 (MQ=255)   ggTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGt                                                                                                                                    >  2:356041/1‑140 (MQ=255)   ggTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGt                                                                                                                                    >  1:309500/1‑140 (MQ=255)      gtAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGtttt                                                                                                                                 <  1:846862/140‑1 (MQ=255)      gtAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGtttt                                                                                                                                 <  1:602791/140‑1 (MQ=255)        aaaCTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGttttca                                                                                                                               >  1:557568/1‑138 (MQ=255)         aaCTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTaa                                                                                                                              <  1:956824/140‑1 (MQ=255)          aCTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAAc                                                                                                                             >  1:425763/1‑140 (MQ=255)           cTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTCAACg                                                                                                                            <  2:557568/140‑1 (MQ=255)              aCCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGtttt                                                                                                                                 >  2:109051/1‑132 (MQ=255)              aCCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGtttt                                                                                                                                 <  1:109051/132‑1 (MQ=255)              aCCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGaaa                                                                                                                         <  1:248145/140‑1 (MQ=255)              aCCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGaaa                                                                                                                         >  2:907749/1‑140 (MQ=255)              aCCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGaaa                                                                                                                         >  2:121864/1‑140 (MQ=255)                    tCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGttttt                                                                                                                                >  1:151521/1‑127 (MQ=255)                    tCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGttttt                                                                                                                                <  2:151521/127‑1 (MQ=255)                    tCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCAt                                                                                                                   >  1:297810/1‑140 (MQ=255)                     ccAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCAtt                                                                                                                  <  1:677037/140‑1 (MQ=255)                     ccAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCAtt                                                                                                                  <  1:356041/140‑1 (MQ=255)                      cAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCAttt                                                                                                                 >  1:948872/1‑140 (MQ=255)                            aaCTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGa                                                                                                           <  1:586094/140‑1 (MQ=255)                            aaCTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGa                                                                                                           <  1:958828/140‑1 (MQ=255)                            aaCTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGa                                                                                                           <  1:321422/140‑1 (MQ=255)                              cTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGaaa                                                                                                         >  1:132672/1‑140 (MQ=255)                              cTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGaaa                                                                                                         <  2:448058/140‑1 (MQ=255)                              cTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGaaa                                                                                                         >  1:249284/1‑140 (MQ=255)                               tGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAAc                                                                                                        <  1:317785/140‑1 (MQ=255)                                   tAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACAttt                                                                                                    >  1:1026829/1‑140 (MQ=255)                                    aaCTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTa                                                                                                   <  2:132672/140‑1 (MQ=255)                                      cTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTaca                                                                                                 <  1:831764/140‑1 (MQ=255)                                      cTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTaca                                                                                                 <  1:121864/140‑1 (MQ=255)                                      cTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTaca                                                                                                 <  1:291737/140‑1 (MQ=255)                                      cTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTaca                                                                                                 >  2:521535/1‑140 (MQ=255)                                       tCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTacac                                                                                                <  2:743679/140‑1 (MQ=255)                                         aCTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTc                                                                                              <  2:297810/140‑1 (MQ=255)                                         aCTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTc                                                                                              <  1:300837/140‑1 (MQ=255)                                         aCTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTc                                                                                              <  2:948872/140‑1 (MQ=255)                                         aCTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATAATTTAATGGAAACATTTACACTc                                                                                              <  2:391425/140‑1 (MQ=255)                                                aaTTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTta                                                                                       <  2:249284/140‑1 (MQ=255)                                                   tCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTtaata                                                                                    >  1:581467/1‑140 (MQ=255)                                                   tCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTtaata                                                                                    >  2:304149/1‑140 (MQ=255)                                                    cATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTtaataa                                                                                   <  2:881299/140‑1 (MQ=255)                                                     aTTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATaaa                                                                                  >  2:210559/1‑140 (MQ=255)                                                         aTGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATtat                                                                              <  1:55182/140‑1 (MQ=255)                                                            aTTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATAtt                                                                           >  1:102925/1‑140 (MQ=255)                                                               gCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGcc                                                                        >  2:920005/1‑140 (MQ=255)                                                                catcatCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTta                                                                                       >  1:720554/1‑124 (MQ=255)                                                                catcatCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTta                                                                                       <  2:720554/124‑1 (MQ=255)                                                                catcatCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGccc                                                                       <  1:504729/140‑1 (MQ=255)                                                                 atcatcAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCa                                                                      >  2:1006742/1‑140 (MQ=255)                                                                     tcaGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAACTTATATTGCCCAGGgc                                                                  >  1:601698/1‑140 (MQ=255)                                                                      taGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCAGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGgcg                                                                 <  2:102925/139‑1 (MQ=255)                                                                      caGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGgcg                                                                 <  1:521535/140‑1 (MQ=255)                                                                      caGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGgcg                                                                 <  1:250145/140‑1 (MQ=255)                                                                      caGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGgcg                                                                 <  1:1026002/140‑1 (MQ=255)                                                                        gATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCa                                                               <  1:1010799/140‑1 (MQ=255)                                                                              aaCTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTaa                                                         >  1:626752/1‑140 (MQ=255)                                                                              aaCTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTaa                                                         >  2:366072/1‑140 (MQ=255)                                                                               aCTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTaaa                                                        >  1:649002/1‑140 (MQ=255)                                                                               aCTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTaaa                                                        >  2:935271/1‑140 (MQ=255)                                                                               aCTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTaaa                                                        >  2:1031147/1‑140 (MQ=255)                                                                                cTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTaaaa                                                       <  1:907749/140‑1 (MQ=255)                                                                                    tgttgtTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAAcaca                                                   <  2:600563/140‑1 (MQ=255)                                                                                    tgttgtTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAAcaca                                                   <  1:405560/140‑1 (MQ=255)                                                                                     gttgttTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACaa                                                  >  1:142833/1‑140 (MQ=255)                                                                                      ttgttTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAAt                                                 <  1:786247/140‑1 (MQ=255)                                                                                           ttATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAAt                                            <  2:737480/140‑1 (MQ=255)                                                                                              tCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTAc                                         <  2:581467/140‑1 (MQ=255)                                                                                              tCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTAc                                         <  1:250380/140‑1 (MQ=255)                                                                                                gTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCa                                       <  2:1026829/140‑1 (MQ=255)                                                                                                   gATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTa                                    <  1:210559/140‑1 (MQ=255)                                                                                                           aTTAGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAAt                            <  1:734019/140‑1 (MQ=255)                                                                                                              aGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAAt                            >  1:449577/1‑137 (MQ=255)                                                                                                              aGATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAAt                            <  2:449577/137‑1 (MQ=255)                                                                                                               gATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCt                        <  1:270817/140‑1 (MQ=255)                                                                                                               gATGTGACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCt                        >  1:625204/1‑140 (MQ=255)                                                                                                                  gtgACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCaaaaa                             <  1:721476/132‑1 (MQ=255)                                                                                                                  gtgACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCaaaaa                             >  2:721476/1‑132 (MQ=255)                                                                                                                  gtgACTATATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCat                     >  2:974133/1‑140 (MQ=255)                                                                                                                    gACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCatat                   >  2:418442/1‑140 (MQ=255)                                                                                                                    gACTTTATTTAATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCatat                   >  1:152855/1‑140 (MQ=255)                                                                                                                         tatttaATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTTTATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATc              >  1:356266/1‑140 (MQ=255)                                                                                                                         tatttaATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCt                        <  2:993/130‑1 (MQ=255)                                                                                                                         tatttaATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCt                        >  1:993/1‑130 (MQ=255)                                                                                                                         tatttaATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATc              >  1:676197/1‑140 (MQ=255)                                                                                                                         tatttaATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATc              >  1:532800/1‑140 (MQ=255)                                                                                                                         tatttaATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATc              >  1:452339/1‑140 (MQ=255)                                                                                                                          atttaATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCg             >  1:1034580/1‑140 (MQ=255)                                                                                                                            ttaATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGcc           <  2:625204/140‑1 (MQ=255)                                                                                                                            ttaATTGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGcc           <  2:532800/140‑1 (MQ=255)                                                                                                                                ttGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGa       >  1:1028573/1‑140 (MQ=255)                                                                                                                                 tGAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGaa      >  2:1047116/1‑140 (MQ=255)                                                                                                                                  gAACCGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAat     <  1:935271/140‑1 (MQ=255)                                                                                                                                     ccGGTTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATg  >  1:752205/1‑140 (MQ=255)                                                                                                                                         |                                                                                                                                        TTGGTGTAAACTTACCATTTCCAAGACAACTGACTAACTCACTTGATAATTCATTTATGATTGCATCATCAGATACTAACTCATGTTGTTTTATCGTAGATTCAGTATTAGATGTGACTTTATTTAATTGAACCGGCTGAGTTTTTAACGAAAGATCATTTAATGGAAACATTTACACTCCTGTTTAATAAATTATATTGCCCAGGGCGCATTCTAAAACACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATG  >  NC_000913/2012180‑2012451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑