Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 1 1
12 1 1
13 1 1
14 1 1
15 1 1
16 1 1
17 1 1
18 1 1
19 1 1
20 1 1
21 1 1
22 1 1
23 1 1
24 1 1
25 1 1
26 1 1
27 1 1
28 1 1
29 1 1
30 1 1
31 1 1
32 1 1
33 1 1
34 1 1
35 1 1
36 1 1
37 1 1
38 1 1
39 1 1
40 1 1
40 40 40

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 395 578
Multiple Base Substitutions 0 0
Deletions 36 159
Insertions 15 132
Mobile Element Insertions 16 56
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 462 925

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F30 I1 R1 18 0 111.2 3806650 98.9% 3764776 139.6
A2 F30 I1 R1 22 0 70.7 2414176 98.9% 2387620 139.5
A3 F30 I1 R1 23 0 121.6 4149200 99.2% 4116006 139.5
A4 F30 I1 R1 25 0 101.8 3422200 98.9% 3384555 139.5
A5 F30 I1 R1 19 0 93.6 3154486 99.2% 3129250 139.5
A6 F30 I1 R1 23 0 150.0 5042186 98.9% 4986721 139.4
A7 F30 I1 R1 15 0 114.9 3921680 99.2% 3890306 139.6
A8 F30 I1 R1 18 0 132.9 4539182 99.0% 4493790 139.5
A9 F30 I1 R1 19 0 107.7 3652036 98.9% 3611863 139.6
A10 F30 I1 R1 16 0 114.1 3882362 98.9% 3839656 139.4
A11 F30 I1 R1 22 0 74.2 2518388 99.0% 2493204 139.5
A12 F30 I1 R1 21 0 105.1 3550032 99.1% 3518081 139.5
A13 F30 I1 R1 30 0 56.5 1912240 98.8% 1889293 139.5
A14 F30 I1 R1 26 0 56.7 1906824 98.9% 1885848 139.6
A15 F30 I1 R1 17 0 55.8 1895390 99.1% 1878331 139.5
A16 F30 I1 R1 21 0 27.8 940334 98.6% 927169 139.7
A17 F30 I1 R1 25 0 46.7 1579334 99.0% 1563540 139.6
A18 F30 I1 R1 26 0 61.5 2070346 99.0% 2049642 139.5
A19 F30 I1 R1 23 0 39.2 1317356 99.1% 1305499 139.6
A20 F30 I1 R1 21 0 56.1 1898210 99.1% 1881126 139.5
A21 F30 I1 R1 22 0 85.5 2875506 98.8% 2840999 139.4
A22 F30 I1 R1 17 0 67.6 2301886 98.8% 2274263 139.4
A23 F30 I1 R1 16 0 89.8 3042298 98.9% 3008832 139.5
A24 F30 I1 R1 24 0 100.5 3409586 98.8% 3368670 139.4
A25 F30 I1 R1 20 0 88.3 3000300 98.9% 2967296 139.5
A26 F30 I1 R1 24 0 81.3 2738174 99.2% 2716268 139.2
A27 F30 I1 R1 19 0 108.7 3713544 98.9% 3672695 139.5
A28 F30 I1 R1 22 0 101.5 3455388 99.0% 3420834 139.4
A29 F30 I1 R1 22 0 53.1 1784884 99.1% 1768820 139.5
A30 F30 I1 R1 21 0 78.2 2653182 99.0% 2626650 139.6
A31 F30 I1 R1 18 0 133.6 4509138 99.0% 4464046 139.4
A32 F30 I1 R1 20 0 120.6 4090038 99.2% 4057317 139.3
A33 F30 I1 R1 25 0 90.3 3057814 99.2% 3033351 139.5
A34 F30 I1 R1 25 0 122.9 4146458 99.2% 4113286 139.4
A35 F30 I1 R1 20 0 108.1 3649530 98.8% 3605735 139.3
A36 F30 I1 R1 28 0 57.3 1952180 98.9% 1930706 139.2
A37 F30 I1 R1 18 0 81.9 2769142 98.9% 2738681 139.0
A38 F30 I1 R1 86 0 84.2 2916478 99.0% 2887313 139.2
A39 F30 I1 R1 25 0 102.9 3439990 99.2% 3412470 139.4
A40 F30 I1 R1 23 0 120.4 4097522 99.0% 4056546 139.3

Mutation Needle Plot

Mutation Targets

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