mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,197,761 | T→A | E159D (GAA→GAT) | ymfE ← | e14 prophage; uncharacterized protein YmfE |
| RA | 1,645,276 | G→T | intergenic (‑2/+70) | hokD ← / ← relE | Qin prophage; toxic protein HokD/Qin prophage; mRNA interferase toxin RelE |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,075,358 | C→A | L194M (CTG→ATG) | yeeR → | CP4‑44 prophage; inner membrane protein YeeR |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,211,645 | G→T | E141* (GAA→TAA) | yehR → | DUF1307 domain‑containing lipoprotein YehR |
| RA | 2,215,391 | A→T | T176S (ACC→TCC) | mlrA → | DNA‑binding transcriptional activator MlrA |
| RA | 2,232,269 | T→C | G142G (GGT→GGC) | cdd → | cytidine/deoxycytidine deaminase |
| RA | 2,260,484 | C→A | A309A (GCG→GCT) | fruA ← | fructose‑specific PTS multiphosphoryl transfer protein FruA |
| RA | 2,950,065 | C→A | A275E (GCG→GAG) | argA → | N‑acetylglutamate synthase |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,810,859 | G→T | S98R (AGC→AGA) | mutM ← | DNA‑formamidopyrimidine glycosylase |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,878,724 | C→T | E466K (GAA→AAA) | gyrB ← | DNA gyrase subunit B |
| RA | 3,932,491 | G→T | W392C (TGG→TGT) | kup → | K(+):H(+) symporter Kup |
| RA | 4,070,417 | G→T | intergenic (‑16/+98) | yihR ← / ← yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase |
| RA | 4,205,328 | C→A | D202Y (GAC→TAC) | purD ← | phosphoribosylamine‑‑glycine ligase |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,344,953 | C→G | R202R (CGG→CGC) | yjdF ← | conserved inner membrane protein YjdF |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102970 | 3104072 | 1103 | 38 [35] | [35] 37 | mutY | mutY |
| * | * | ÷ | NC_000913 | 3423771–3424234 | 3424533–3424238 | 5–763 | 36 [34] | [34] 36 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 114 (0.960) | 58/268 | 0.5 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 197 (1.610) | 234 (1.930) | 90/274 | 0.0 | 70.4% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 1 (0.010) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 143 (1.170) | 74/276 | 0.2 | 95.3% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 7 (0.060) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||