BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,197,761	T→A	E159D (GAA→GAT)	ymfE ←	e14 prophage; uncharacterized protein YmfE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,197,761	0	T	A	100.0%	405.7 / NA	112	E159D (GAA→GAT)	ymfE	e14 prophage; uncharacterized protein YmfE
Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (43/69); total (43/69)

Only 100 of 115 total aligned reads displayed.

AAGATAATACCACTCACTGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAATTCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGCTCATTACATTGTGAGCTTCATCTTTATTTAATTTTCTGTT  >  NC_000913/1197627‑1197895

aagATAATACCACTCACTGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCaaa                                                                                                                                   >  2:505650/1‑140 (MQ=255)

  gATAATACCACTCACTGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCaaaaa                                                                                                                                 >  2:281881/1‑140 (MQ=255)

   ataataCCACTCACTGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCaaaaaa                                                                                                                                <  1:1959684/140‑1 (MQ=255)

     aataCCACTCACTGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAata                                                                                                                              <  1:972752/140‑1 (MQ=255)

       taCCACTCACTGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATc                                                                                                                            >  1:728743/1‑140 (MQ=255)

        aCCACTCACTGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATcc                                                                                                                           >  2:837370/1‑140 (MQ=255)

        aCCACTCACTGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATcc                                                                                                                           >  2:824408/1‑140 (MQ=255)

        aCCACTCACTGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATcc                                                                                                                           >  2:794322/1‑140 (MQ=255)

          cactcactGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCaa                                                                                                                         <  2:1491601/140‑1 (MQ=255)

          cactcactGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCaa                                                                                                                         <  1:1724718/140‑1 (MQ=255)

            ctcactGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCaaaa                                                                                                                       >  2:1075695/1‑140 (MQ=255)

             tcactGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCaaaaa                                                                                                                      >  2:1215763/1‑140 (MQ=255)

             tcactGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCaaaaa                                                                                                                      >  2:160651/1‑140 (MQ=255)

             tcactGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCaaaaa                                                                                                                      >  2:171266/1‑140 (MQ=255)

               actGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATa                                                                                                                    >  2:534593/1‑140 (MQ=255)

                 tGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCaaa                                                                                                                        <  2:1123080/134‑1 (MQ=255)

                 tGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCaaa                                                                                                                        >  1:1123080/1‑134 (MQ=255)

                 tGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGt                                                                                                                  >  1:681428/1‑140 (MQ=255)

                   agaATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGtat                                                                                                                >  1:546902/1‑140 (MQ=255)

                   agaATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGtat                                                                                                                >  2:1662542/1‑140 (MQ=255)

                       tGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACtt                                                                                                            <  1:748584/140‑1 (MQ=255)

                       tGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACtt                                                                                                            <  2:681428/140‑1 (MQ=255)

                       tGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACtt                                                                                                            <  1:359278/140‑1 (MQ=255)

                       tGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACtt                                                                                                            >  1:1965118/1‑140 (MQ=255)

                       tGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACtt                                                                                                            <  2:2026481/140‑1 (MQ=255)

                       tGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACtt                                                                                                            <  2:645869/140‑1 (MQ=255)

                       tGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACtt                                                                                                            <  2:536268/140‑1 (MQ=255)

                         aTAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTa                                                                                                          <  1:281881/140‑1 (MQ=255)

                             aaTTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTcc                                                                                                      >  1:627373/1‑140 (MQ=255)

                               ttACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGta                                                                                                                 <  1:1275150/127‑1 (MQ=255)

                               ttACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGta                                                                                                                 >  2:1275150/1‑127 (MQ=255)

                               ttACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCag                                                                                                    <  1:1215763/140‑1 (MQ=255)

                               ttACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCag                                                                                                    <  1:953596/140‑1 (MQ=255)

                               ttACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCag                                                                                                    >  2:1016266/1‑140 (MQ=255)

                               ttACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCag                                                                                                    >  2:1442247/1‑140 (MQ=255)

                                 aCAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCagaa                                                                                                  <  1:237605/140‑1 (MQ=255)

                                 aCAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCagaa                                                                                                  <  2:1417216/140‑1 (MQ=255)

                                 aCAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCagaa                                                                                                  <  1:505650/140‑1 (MQ=255)

                                     aaaaGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGt                                                                                              <  1:794322/140‑1 (MQ=255)

                                      aaaGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGtt                                                                                             <  1:1826312/140‑1 (MQ=255)

                                      aaaGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGtt                                                                                             <  2:100726/140‑1 (MQ=255)

                                         gAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCaa                                                                                          <  2:429120/140‑1 (MQ=255)

                                          aaTAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAat                                                                                         >  1:1283708/1‑140 (MQ=255)

                                                  cAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAA‑TAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGttt                                                                                <  1:1178286/140‑1 (MQ=255)

                                                    gCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTg                                                                               >  1:1051414/1‑140 (MQ=255)

                                                    gCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTg                                                                               >  2:1806737/1‑140 (MQ=255)

                                                    gCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTg                                                                               >  1:865231/1‑140 (MQ=255)

                                                    gCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTg                                                                               >  1:692680/1‑140 (MQ=255)

                                                    gCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTg                                                                               >  1:1133081/1‑140 (MQ=255)

                                                    gCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTg                                                                               >  1:1461087/1‑140 (MQ=255)

                                                             cTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAAtt                                                                      >  1:1822219/1‑140 (MQ=255)

                                                             cTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAAtt                                                                      <  1:160651/140‑1 (MQ=255)

                                                                  aCATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCt                                                                 <  2:1051414/140‑1 (MQ=255)

                                                                       aaaaaTATCCATTTGTTTGCAAAAAAAGGTTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACtt                                                            <  2:205386/140‑1 (MQ=255)

                                                                       aaaaaTATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACtt                                                            <  2:145247/140‑1 (MQ=255)

                                                                       aaaaaTATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACtt                                                            <  2:1964747/140‑1 (MQ=255)

                                                                       aaaaaTATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACtt                                                            <  2:455079/140‑1 (MQ=255)

                                                                       aaaaaTATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACtt                                                            <  2:1730696/140‑1 (MQ=255)

                                                                       aaaaaTATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACtt                                                            <  1:14490/140‑1 (MQ=255)

                                                                       aaaaaTATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACtt                                                            <  1:1016266/140‑1 (MQ=255)

                                                                         aaaTATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCa                                                          <  1:1083147/140‑1 (MQ=255)

                                                                         aaaTATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCa                                                          <  1:631401/140‑1 (MQ=255)

                                                                          aaTATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAg                                                         <  1:824408/140‑1 (MQ=255)

                                                                           atatCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAgg                                                        <  1:1286586/140‑1 (MQ=255)

                                                                           atatCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAgg                                                        <  2:408114/140‑1 (MQ=255)

                                                                           atatCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAgg                                                        <  1:1910471/140‑1 (MQ=255)

                                                                           atatCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAgg                                                        <  2:1642990/140‑1 (MQ=255)

                                                                           atatCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAgg                                                        <  2:508261/140‑1 (MQ=255)

                                                                            tatCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAggg                                                       <  2:287479/140‑1 (MQ=255)

                                                                             atCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGt                                                      <  1:772429/140‑1 (MQ=255)

                                                                              tCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTa                                                     <  2:1837301/140‑1 (MQ=255)

                                                                                    tgtttgCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAg                                               >  2:1219648/1‑140 (MQ=255)

                                                                                     ttttgAAAAAAAAAATTATTAGAAAGAAAATTAATGAAATTATCGAAAAATAAAAAAATATCCAAAAATAGTATTCTTTATCCCAGAAGAGTTAAATATAATTTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGa                                              <  2:1183426/139‑1 (MQ=255)

                                                                                     gtttgCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGa                                              <  2:692680/140‑1 (MQ=255)

                                                                                      tttgCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGAt                                             >  2:147415/1‑140 (MQ=255)

                                                                                       ttgCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGAtt                                            <  1:39559/140‑1 (MQ=255)

                                                                                       ttgCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGAtt                                            <  1:59199/140‑1 (MQ=255)

                                                                                        tgCAAAAAAAGATTATTAGGAAGGCAATTAATGCAATTATCGAGAAATCAAAAAATATCCAAAAATAGAATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTg                                           >  2:312550/1‑140 (MQ=255)

                                                                                        tgCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTg                                           <  1:840304/140‑1 (MQ=255)

                                                                                         gCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGc                                          <  1:837370/140‑1 (MQ=255)

                                                                                         gCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGc                                          <  1:1970861/140‑1 (MQ=255)

                                                                                         gCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGc                                          <  2:1175997/140‑1 (MQ=255)

                                                                                           aaaaaaaGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATTTAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGCTc                                        <  2:1835782/140‑1 (MQ=255)

                                                                                            aaaaaaGATTATTACGAAAGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATTCTTTATTCCAGAAGAGTACAATATAAAGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGAATGCTCa                                       <  2:896568/140‑1 (MQ=255)

                                                                                                 aGATTATTAGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATCGATTGCTCATTACa                                  <  2:728743/140‑1 (MQ=255)

                                                                                                     tattaGGAAGGAAATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGCTCATTACATtgt                              <  2:609990/140‑1 (MQ=255)

                                                                                                           gaaggaaATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGCTCATTACATTGTGAGCtt                        <  2:694521/140‑1 (MQ=255)

                                                                                                            aaggaaATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGCTCATTACATTGTGAGCTTc                       >  1:29089/1‑140 (MQ=255)

                                                                                                              ggaaATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGCTCATTACATTGTGAGCTTCAt                     >  1:185498/1‑140 (MQ=255)

                                                                                                               gaaATTAATGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGCTCATTACATTGTGAGCTTCATc                    >  1:645561/1‑140 (MQ=255)

                                                                                                                       tGCAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGCTCATTACATTGTGAGCTTCATCtttattta            <  2:627373/140‑1 (MQ=255)

                                                                                                                         cAATTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGCTCATTACATTGTGAGCTTCATCTTTATTTAAt          >  1:113474/1‑140 (MQ=255)

                                                                                                                           aTTATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGCTCATTACATTGTGAGCTTCATCTTTATTTAAttt        <  1:653087/140‑1 (MQ=255)

                                                                                                                            ttATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGCTCATTACATTGTGAGCTTCATCTTTATTTAAtttt       >  1:51443/1‑140 (MQ=255)

                                                                                                                            ttATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGCTCATTACATTGTGAGCTTCATCTTTATTTAAtttt       <  2:865231/140‑1 (MQ=255)

                                                                                                                            ttATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGCTCATTACATTGTGAGCTTCATCTTTATTTAAtttt       >  2:171750/1‑140 (MQ=255)

                                                                                                                             tATCGAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGCTCATTACATTGTGAGCTTCATCTTTATTTAATTTTc      >  1:447281/1‑140 (MQ=255)

                                                                                                                                 gAAAAATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGCTCATTACATTGTGAGCTTCATCTTTATTTAATTTTCTGtt  <  1:1806737/140‑1 (MQ=255)

                                                                                                                                  aaaaATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGCTCATTACATTGTGAGCTTCATCTTTATTTAATTTTCTGtt  <  1:603259/139‑1 (MQ=255)

                                                                                                                                  aaaaATCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGCTCATTACATTGTGAGCTTCATCTTTATTTAATTTTCTGtt  >  2:603259/1‑139 (MQ=255)

AAGATAATACCACTCACTGAGAATGATAAAATTACAAAAAAGAATAAAGACAGCAAAGAACCTTCAACATGAAAAATATCCATTTGTTTGCAAAAAAAGATTATTAGGAAGGAAATTAATGCAATTATCGAAAATTCAAAAAATATCCAAAAATAGTATACTTTATTCCAGAAGAGTTCAATATAATGTTTGTCTTCAATTTTTCTTACTTCAGGGTAATATAGATTGCTCATTACATTGTGAGCTTCATCTTTATTTAATTTTCTGTT  >  NC_000913/1197627‑1197895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`