mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| MC | 279,931 | Δ11,471 bp | between IS1 | yagB–insA‑3 | yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3 |
| RA | 845,139 | G→T | F114L (TTC→TTA) | ybiO ← | moderate conductance mechanosensitive channel |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,182,925 | C→A | A232A (GCG→GCT) | potC ← | spermidine preferential ABC transporter membrane subunit PotC |
| RA | 1,352,847 | G→T | A261E (GCG→GAG) | sapD ← | putrescine ABC exporter ATP binding protein SapD |
| RA | 1,557,404 | C→A | R212L (CGG→CTG) | ddpF ← | putative D,D‑dipeptide ABC transporter ATP‑binding subunit DdpF |
| RA | 1,653,325 | T→C | E197E (GAA→GAG) | rspB ← | putative zinc‑binding dehydrogenase RspB |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,016,447 | C→A | L194I (CTC→ATC) | fliH → | flagellar biosynthesis protein FliH |
| RA | 2,153,070 | C→A | C20F (TGC→TTC) | yegL ← | IPR002035 domain‑containing protein YegL |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| JC JC | 3,806,203 | IS5 (+) +4 bp | coding (862‑865/1125 nt) | waaG ← | lipopolysaccharide glucosyltransferase I |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 4,137,807 | G→T | intergenic (‑150/+125) | yijF ← / ← gldA | conserved protein YijF/L‑1,2‑propanediol dehydrogenase/glycerol dehydrogenase |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,417,109 | C→A | A53D (GCT→GAT) | yjfP → | carboxylesterase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102950 | 3104083 | 1134 | 35 [31] | [30] 33 | mutY | mutY |
| * | * | ÷ | NC_000913 | 3423761–3424234 | 3424536–3424239 | 6–776 | 32 [31] | [31] 33 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 84 (1.020) | 61/268 | 0.1 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 116 (1.370) | 110 (1.310) | 61/274 | 0.1 | 65.1% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 3 (0.040) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 60 (0.710) | 46/276 | 0.6 | 96.8% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 2 (0.020) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||