mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,254,389 | C→A | E522* (GAG→TAG) | ycgV ← | putative autotransporter adhesin YcgV |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,502,924 | C→G | G156G (GGC→GGG) | ydcL → | DUF3313 domain‑containing lipoprotein YdcL |
| RA | 1,527,021 | C→A | H28N (CAC→AAC) | yncH → | DUF5445 domain‑containing protein YncH |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| JC JC | 1,821,055 | IS5 (–) +4 bp | coding (157‑160/1359 nt) | chbC ← | N,N'‑diacetylchitobiose‑specific PTS enzyme IIC component |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,058,118 | C→A | intergenic (‑16/+85) | asnW ← / ← yeeO | tRNA‑Asn/FMN/FAD exporter |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,947,290 | A→G | intergenic (‑112/‑97) | mltA ← / → metZ | membrane‑bound lytic murein transglycosylase A/tRNA‑Met |
| RA | 3,204,685 | G→T | intergenic (‑96/‑9) | folB ← / → plsY | dihydroneopterin aldolase/putative glycerol‑3‑phosphate acyltransferase |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,420,824 | G→C | A231P (GCG→CCG) | yhdX → | putative ABC transporter membrane subunit YhdX |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| JC | 3,671,365 | Δ13 bp | coding (518‑530/603 nt) | yhjB ← | putative DNA‑binding transcriptional regulator YhjB |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,877,880 | G→T | P747Q (CCG→CAG) | gyrB ← | DNA gyrase subunit B |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196227 | 1211451 | 15225 | 54 [53] | [53] 56 | [icd]–[icdC] | [icd],ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,[icdC] |
| * | * | ÷ | NC_000913 | 3102973 | 3104091 | 1119 | 56 [53] | [53] 58 | mutY | mutY |
| * | * | ÷ | NC_000913 | 3423764–3424234 | 3424552–3424239 | 6–789 | 55 [53] | [52] 54 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3363001 = | 202 (1.360) | 213 (1.440) | 94/274 | 0.1 | 67.7% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 3 (0.020) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 159 (1.070) | 83/276 | 0.2 | 96.4% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 6 (0.040) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||