mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 33,813 | G→T | P999P (CCG→CCT) | carB → | carbamoyl phosphate synthetase subunit beta |
| RA | 237,845 | G→T | D171Y (GAC→TAC) | yafT → | lipoprotein YafT |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 338,125 | A→C | I450L (ATC→CTC) | yahF → | putative acyl‑CoA synthetase YahF |
| RA | 657,102 | G→T | M182I (ATG→ATT) | pagP → | Lipid IVA palmitoyltransferase |
| RA | 763,390 | C→A | S126Y (TCC→TAC) | sucC → | succinyl‑CoA synthetase subunit beta |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 994,297 | G→T | P179H (CCC→CAC) | ssuC ← | aliphatic sulfonate ABC transporter membrane subunit |
| RA | 1,012,376 | G→T | E126* (GAA→TAA) | pqiA → | intermembrane transport protein PqiA |
| RA | 1,045,847 | G→T | intergenic (‑44/+2) | gfcE ← / ← gfcD | putative exopolysaccharide export lipoprotein GfcE/putative lipoprotein GfcD |
| RA | 1,218,872 | A→G | intergenic (+21/‑111) | pdeG → / → ymgF | putative c‑di‑GMP phosphodiesterase PdeG/inner membrane protein that interacts with cell division proteins |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,371,707 | G→T | G267V (GGT→GTT) | arnT → | lipid IVA 4‑amino‑4‑deoxy‑L‑arabinosyltransferase |
| RA | 2,659,545 | G→T | intergenic (‑78/+18) | hscB ← / ← iscA | co‑chaperone for [Fe‑S] cluster biosynthesis/iron‑sulfur cluster insertion protein IscA |
| RA | 3,126,933 | C→A | L363L (CTG→CTT) | glcD ← | glycolate dehydrogenase, putative FAD‑linked subunit |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,535,950 | A→T | V212E (GTG→GAG) | ompR ← | DNA‑binding transcriptional dual regulator OmpR |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,714,757 | G→T | R546R (CGC→CGA) | bisC ← | biotin sulfoxide reductase |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 4,033,155 | G→T | R4L (CGC→CTC) | trkH → | K(+) transporter TrkH |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,285,076 | G→T | F46L (TTC→TTA) | yjcH ← | conserved inner membrane protein YjcH |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,547,852 | C→A | G37G (GGC→GGA) | fimF → | type 1 fimbriae minor subunit FimF |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102972 | 3104053 | 1082 | 16 [14] | [14] 16 | [mutY] | [mutY] |
| * | * | ÷ | NC_000913 | 3423761–3424234 | 3424536–3424238 | 5–776 | 16 [15] | [15] 17 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 44 (0.770) | 16 (0.320) | 15/244 | 2.1 | 25.0% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 57 (1.120) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 44 (0.770) | 12 (0.240) | 11/244 | 3.0 | 20.0% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 57 (1.120) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 45 (0.810) | 36/268 | 0.4 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 92 (1.600) | 89 (1.560) | 55/274 | 0.0 | 65.1% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 4 (0.070) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 56 (0.980) | 41/276 | 0.3 | 98.2% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 1 (0.020) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||