Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 1 1
12 1 1
13 1 1
14 1 1
15 1 1
16 1 1
17 1 1
18 1 1
19 1 1
20 1 1
21 1 1
22 1 1
23 1 1
24 1 1
25 1 1
26 1 1
27 1 1
28 1 1
29 1 1
30 1 1
31 1 1
32 1 1
33 1 1
34 1 1
35 1 1
36 1 1
37 1 1
38 1 1
39 1 1
40 1 1
41 1 1
42 1 1
43 1 1
43 43 43

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 387 600
Multiple Base Substitutions 1 1
Deletions 16 150
Insertions 8 134
Mobile Element Insertions 10 52
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 422 937

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F30 I1 R1 18 0 47.5 1605326 99.2% 1592483 138.8
A2 F30 I1 R1 24 0 19.5 654686 99.2% 649448 138.8
A3 F30 I1 R1 22 0 86.6 2975400 99.4% 2957547 138.8
A4 F30 I1 R1 23 0 42.7 1455564 99.2% 1443919 138.6
A5 F30 I1 R1 19 0 54.8 1864302 98.6% 1838201 138.4
A6 F30 I1 R1 25 0 63.6 2147816 99.4% 2134929 138.7
A7 F30 I1 R1 18 0 107.8 3626394 99.4% 3604635 138.1
A8 F30 I1 R1 19 0 89.9 3035268 99.4% 3017056 138.9
A9 F30 I1 R1 19 0 57.1 1939578 99.3% 1926000 138.5
A10 F30 I1 R1 21 0 53.6 1805830 99.2% 1791383 138.5
A11 F30 I1 R1 24 0 51.0 1727166 99.1% 1711621 138.6
A12 F30 I1 R1 22 0 86.0 2916610 99.3% 2896193 138.6
A13 F30 I1 R1 17 0 69.5 2349738 99.2% 2330940 138.7
A14 F30 I1 R1 20 0 70.7 2392400 99.2% 2373260 138.6
A15 F30 I1 R1 19 0 47.3 1605240 99.2% 1592398 138.6
A16 F30 I1 R1 19 0 87.4 2945396 99.2% 2921832 139.0
A17 F30 I1 R1 22 0 146.6 4936358 99.2% 4896867 138.5
A18 F30 I1 R1 22 0 76.3 2574204 99.1% 2551036 139.5
A19 F30 I1 R1 21 0 20.2 686622 99.1% 680442 139.3
A20 F30 I1 R1 25 0 54.5 1844758 99.1% 1828155 139.4
A21 F30 I1 R1 17 0 87.1 2951322 99.3% 2930662 139.3
A22 F30 I1 R1 23 0 155.7 5253390 99.4% 5221869 139.1
A23 F30 I1 R1 26 0 128.2 4334570 99.4% 4308562 138.9
A24 F30 I1 R1 17 0 36.3 1245384 98.8% 1230439 138.9
A25 F30 I1 R1 18 0 41.0 1418494 98.5% 1397216 138.7
A26 F30 I1 R1 19 0 50.2 1707380 99.2% 1693720 138.7
A27 F30 I1 R1 23 0 104.4 3531544 99.3% 3506823 138.7
A28 F30 I1 R1 21 0 87.1 2940360 99.4% 2922717 138.9
A29 F30 I1 R1 26 0 45.9 1554102 99.2% 1541669 138.8
A30 F30 I1 R1 25 0 26.9 915936 99.4% 910440 139.6
A31 F30 I1 R1 28 0 44.1 1499574 99.3% 1489076 139.8
A32 F30 I1 R1 30 0 51.0 1723162 99.3% 1711099 139.1
A33 F30 I1 R1 20 0 46.9 1598816 99.4% 1589223 139.5
A34 F30 I1 R1 17 0 31.2 1061324 99.4% 1054956 139.7
A35 F30 I1 R1 29 0 21.9 747794 99.4% 743307 139.6
A36 F30 I1 R1 19 0 98.9 3364616 99.3% 3341063 138.5
A37 F30 I1 R1 27 0 143.0 4857240 99.3% 4823239 138.7
A38 F30 I1 R1 19 0 117.7 4008588 99.4% 3984536 138.6
A39 F30 I1 R1 22 0 89.0 3054638 99.3% 3033255 138.7
A40 F30 I1 R1 29 0 105.3 3544336 99.4% 3523069 138.7
A41 F30 I1 R1 16 0 110.2 3709832 99.4% 3687573 138.8
A42 F30 I1 R1 23 0 105.7 3586946 99.3% 3561837 139.2
A43 F30 I1 R1 24 0 129.9 4391548 99.4% 4365198 139.5

Mutation Needle Plot

Mutation Targets

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