mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 3,618 | C→A | P273Q (CCG→CAG) | thrB → | homoserine kinase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 385,349 | C→A | Q40K (CAG→AAG) | tauA → | taurine ABC transporter periplasmic binding protein |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,235,936 | G→T | S224S (TCG→TCT) | preA → | NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA |
| RA | 2,601,623 | C→A | T141T (ACC→ACA) | hyfA → | hydrogenase 4 component A |
| RA | 2,698,293 | G→T | F86L (TTC→TTA) | pgpC ← | phosphatidylglycerophosphatase C |
| RA | 3,037,861 | G→T | A82A (GCC→GCA) | recJ ← | ssDNA‑specific exonuclease RecJ |
| RA | 3,098,079 | G→T | V271V (GTG→GTT) | yggW → | putative coproporphyrinogen‑III oxidase‑like protein YggW |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,715,561 | G→T | F278L (TTC→TTA) | bisC ← | biotin sulfoxide reductase |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,846,748 | G→T | G140G (GGC→GGA) | uhpT ← | hexose‑6‑phosphate:phosphate antiporter |
| RA | 3,847,131 | G→T | L13M (CTG→ATG) | uhpT ← | hexose‑6‑phosphate:phosphate antiporter |
| RA | 4,218,455 | C→A | intergenic (+42/‑141) | aceA → / → aceK | isocitrate lyase/isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,221,548 | C→A | V314F (GTT→TTT) | arpA ← | regulator of acetyl CoA synthetase |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102974 | 3104076 | 1103 | 9 [7] | [8] 9 | mutY | mutY |
| * | * | ÷ | NC_000913 | 3423770–3424232 | 3424544–3424242 | 11–775 | 11 [8] | [8] 10 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 56 (1.310) | 11 (0.290) | 11/244 | 1.9 | 20.7% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 35 (0.930) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 49 (1.180) | 41/268 | 0.1 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 61 (1.430) | 67 (1.580) | 45/274 | 0.1 | 68.9% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 0 (0.000) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 49 (1.150) | 35/276 | 0.2 | 92.5% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 4 (0.090) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||