mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 273,156 | C→A | P104T (CCC→ACC) | ykfC → | CP4‑6 prophage; PF00078 domain‑containing protein YkfC |
| RA | 368,910 | G→T | Q100H (CAG→CAT) | mhpA → | putative 3‑(3‑hydroxyphenyl)propanoate/3‑hydroxycinnamate hydroxylase |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,366,085 | C→A | T179K (ACA→AAA) | puuE → | 4‑aminobutyrate aminotransferase PuuE |
| RA | 1,636,627 | G→A | intergenic (‑260/‑129) | nohA ← / → ynfO | Qin prophage; putative prophage DNA‑packaging protein NohA/Qin prophage; protein YnfO |
| RA | 1,636,629 | 2 bp→CT | intergenic (‑262/‑126) | nohA ← / → ynfO | Qin prophage; putative prophage DNA‑packaging protein NohA/Qin prophage; protein YnfO |
| RA | 1,636,632 | G→C | intergenic (‑265/‑124) | nohA ← / → ynfO | Qin prophage; putative prophage DNA‑packaging protein NohA/Qin prophage; protein YnfO |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| RA | 1,744,065 | C→A | V203V (GTC→GTA) | mdtK → | multidrug efflux pump MdtK |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,971,608 | C→A | H4Q (CAC→CAA) | tas → | putative NADP(H)‑dependent aldo‑keto reductase Tas |
| RA | 3,063,387 | G→T | R134L (CGA→CTA) | argK → | methylmalonyl‑CoA mutase‑interacting GTPase YgfD |
| RA | 3,192,822 | G→A | W205* (TGG→TGA) | yqiJ → | putative inner membrane protein |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,682,266 | C→A | A394A (GCG→GCT) | dctA ← | C4 dicarboxylate/orotate:H(+) symporter |
| RA | 3,788,586 | C→A | R162R (CGC→CGA) | yibQ → | divergent polysaccharide deacetylase domain‑containing protein YibQ |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,966,437 | G→T | K7N (AAG→AAT) | rho → | transcription termination factor Rho |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,619,014 | C→A | F262L (TTC→TTA) | deoA → | thymidine phosphorylase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102970 | 3104052 | 1083 | 10 [8] | [8] 9 | [mutY] | [mutY] |
| * | * | ÷ | NC_000913 | 3423783–3424234 | 3424534–3424239 | 6–752 | 9 [8] | [8] 9 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3363001 = | 66 (1.450) | 70 (1.540) | 42/274 | 0.1 | 68.1% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 0 (0.000) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 46 (1.010) | 37/276 | 0.2 | 93.9% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 3 (0.070) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||