mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 27.9% | 70.0 / 17.2 | 43 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,296,060 | 0 | C | T | 22.6% | 63.0 / 13.5 | 31 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 60 (1.310) | 8 (0.200) | 7/244 | 2.9 | 16.7% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 27 (0.670) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 1207790 = | 54 (1.180) | 7 (0.170) | 6/244 | 3.2 | 15.8% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 27 (0.670) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 1775191 = | 25 (0.550) | 12 (0.260) | 6/274 | 3.5 | 32.4% | coding (506/759 nt) | aroD | 3‑dehydroquinate dehydratase |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 3045988 = | 30 (0.660) | 10 (0.240) | 5/256 | 3.6 | 29.5% | intergenic (‑87/+180) | ygfF/gcvP | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase |
| ? | NC_000913 | 3046089 = | 20 (0.470) | intergenic (‑188/+79) | ygfF/gcvP | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase | |||||
| * | ? | NC_000913 | 1272758 = | 45 (0.990) | 4 (0.100) | 4/254 | 4.0 | 9.2% | coding (252/696 nt) | chaC | glutathione‑specific gamma‑glutamylcyclotransferase |
| ? | NC_000913 | 1273352 = | 38 (0.910) | coding (248/354 nt) | ychN | DsrE/F sulfur relay family protein YchN | |||||
| * | ? | NC_000913 | 3045995 = | 25 (0.550) | 6 (0.140) | 4/264 | 4.1 | 21.9% | intergenic (‑94/+173) | ygfF/gcvP | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase |
| ? | NC_000913 | 3046081 = | 19 (0.440) | intergenic (‑180/+87) | ygfF/gcvP | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase | |||||
| * | ? | NC_000913 | = 1775194 | 25 (0.550) | 20 (0.440) | 4/274 | 4.2 | 44.4% | coding (509/759 nt) | aroD | 3‑dehydroquinate dehydratase |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 3813393 = | 56 (1.230) | 3 (0.070) | 3/258 | 4.5 | 5.2% | coding (663/1221 nt) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase |
| ? | NC_000913 | = 3813389 | 56 (1.310) | coding (659/1221 nt) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase | |||||
| * | ? | NC_000913 | = 1775194 | 25 (0.550) | 3 (0.070) | 3/274 | 4.7 | 10.7% | coding (509/759 nt) | aroD | 3‑dehydroquinate dehydratase |
| ? | NC_000913 | = 2067353 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||