mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 355,227 | C→A | G102G (GGC→GGA) | codB → | cytosine transporter |
| RA | 365,410 | G→T | P299Q (CCG→CAG) | lacZ ← | beta‑galactosidase |
| RA | 561,551 | C→A | Q619K (CAA→AAA) | sfmD → | putative fimbrial usher protein SfmD |
| MC JC | 776,934 | Δ90 bp | coding (593‑682/1266 nt) | tolA → | Tol‑Pal system protein TolA |
| RA | 829,104 | G→T | T290N (ACC→AAC) | ybhG ← | HlyD_D23 family protein YbhG |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| RA | 1,791,005 | C→A | A80A (GCG→GCT) | ydiU ← | UPF0061 family protein YdiU |
| RA | 1,830,164 | G→T | A201E (GCA→GAA) | astA ← | arginine N‑succinyltransferase |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,352,538 | G→T | intergenic (‑164/‑109) | glpT ← / → glpA | sn‑glycerol 3‑phosphate:phosphate antiporter/anaerobic glycerol‑3‑phosphate dehydrogenase subunit A |
| RA | 2,545,816 | C→A | S15* (TCG→TAG) | murQ → | N‑acetylmuramic acid 6‑phosphate etherase |
| RA | 2,797,105 | C→A | intergenic (‑77/‑106) | yqaE ← / → ygaV | Pmp3 family protein/putative DNA‑binding transcriptional regulator YgaV |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,958,523 | G→T | G185V (GGC→GTC) | ilvC → | ketol‑acid reductoisomerase (NADP(+)) |
| RA | 4,133,106 | C→A | A164E (GCG→GAG) | metF → | 5,10‑methylenetetrahydrofolate reductase |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,492,306 | G→T | L74M (CTG→ATG) | idnT ← | L‑idonate/5‑ketogluconate/gluconate transporter |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 433029 | 433133 | 105 | 6 [4] | [4] 5 | nrdR | NrdR transcriptional repressor |
| * | * | ÷ | NC_000913 | 3103003 | 3104043 | 1041 | 5 [4] | [0] 5 | [mutY] | [mutY] |
| * | * | ÷ | NC_000913 | 3423790–3424232 | 3424558–3424239 | 8–769 | 5 [4] | [4] 5 | [rrlD] | [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 18 (0.660) | 26 (1.080) | 21/246 | 0.2 | 69.4% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 7 (0.290) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 18 (0.660) | 15 (0.620) | 13/246 | 0.7 | 56.7% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 7 (0.290) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 3363001 = | 41 (1.510) | 44 (1.630) | 32/276 | 0.0 | 68.4% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 0 (0.000) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 19 (0.700) | 14/278 | 0.8 | 95.0% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 1 (0.040) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||