mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 444,317 | G→T | L67I (CTC→ATC) | panE ← | 2‑dehydropantoate 2‑reductase |
| RA | 652,520 | G→T | D96Y (GAT→TAT) | dpiB → | sensory histidine kinase DpiB |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,035,902 | G→T | G45C (GGT→TGT) | hyaD → | putative hydrogenase 1 maturation protease HyaD |
| RA | 1,211,435 | C→T | pseudogene (23/165 nt) | icdC → | protein IcdC |
| RA | 1,510,229 | C→A | A76E (GCG→GAG) | ydcR → | fused putative DNA‑binding transcriptional regulator/putative aminotransferase YdcR |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| RA | 1,807,825 | C→A | S10R (AGC→AGA) | yniA → | putative kinase YniA |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,623,553 | G→T | A170A (GCG→GCT) | ppk → | polyphosphate kinase |
| RA | 3,019,339 | G→T | C60F (TGC→TTC) | ssnA → | putative aminohydrolase |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,609,359 | G→T | S48I (AGC→ATC) | yhhQ → | putative queuosine precursor transporter |
| RA | 3,615,053 | Δ1 bp | coding (1387/1575 nt) | nikA → | Ni(2(+)) ABC transporter periplasmic binding protein |
| RA | 3,687,735 | G→T | A480E (GCG→GAG) | bcsC ← | cellulose biosynthesis protein BcsC |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 4,080,048 | G→T | intergenic (+79/+251) | yiiF → / ← fdhE | protein YiiF/formate dehydrogenase formation protein |
| RA | 4,117,320 | G→T | R257R (CGC→CGA) | glpF ← | glycerol facilitator |
| RA | 4,143,491 | C→A | A321D (GCT→GAT) | frwC → | putative PTS enzyme IIC component FrwC |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102962 | 3104057 | 1096 | 15 [14] | [14] 15 | [mutY] | [mutY] |
| * | * | ÷ | NC_000913 | 3423785–3424234 | 3424523–3424239 | 6–739 | 17 [14] | [10] 16 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 12 (0.190) | 85 (1.520) | 46/244 | 0.1 | 90.6% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 7 (0.130) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 12 (0.190) | 32 (0.570) | 27/244 | 0.8 | 78.4% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 7 (0.130) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 55 (0.900) | 40/268 | 0.3 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 95 (1.500) | 83 (1.320) | 44/274 | 0.2 | 63.8% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 0 (0.000) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 69 (1.090) | 42/276 | 0.3 | 95.8% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 3 (0.050) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||