mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 50.0% | 35.8 / 45.3 | 56 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,111,747 | 0 | G | T | 47.8% | 15.5 / 22.2 | 23 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 3,740,909 | 0 | T | G | 35.4% | 74.0 / 16.4 | 48 | V402G (GTG→GGG) | avtA | valine‑‑pyruvate aminotransferase |
| * | NC_000913 | 646,747 | 0 | T | G | 34.3% | 50.8 / 18.3 | 35 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| * | NC_000913 | 753,125 | 0 | T | A | 34.1% | 74.4 / 18.5 | 44 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 372,640 | 0 | T | G | 32.4% | 54.8 / 16.5 | 37 | L176V (TTA→GTA) | mhpD | 2‑hydroxypentadienoate hydratase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.2% | 73.4 / 34.9 | 48 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 646,760 | 0 | T | C | 30.0% | 64.6 / 13.5 | 40 | K250K (AAA→AAG) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| * | NC_000913 | 3,206,435 | 0 | C | T | 30.0% | 65.3 / 16.9 | 40 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 4,429,984 | 0 | T | G | 27.8% | 67.8 / 13.0 | 36 | L41V (TTG→GTG) | cycA | serine/alanine/glycine/cycloserine:H(+)symporter |
| * | NC_000913 | 802,118 | 0 | A | C | 27.3% | 83.7 / 11.1 | 44 | T78P (ACC→CCC) | ybhI | putative tricarboxylate transporter |
| * | NC_000913 | 2,001,918 | 0 | A | C | 25.6% | 87.8 / 13.1 | 43 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 2,326,450 | 0 | T | G | 24.4% | 81.5 / 14.4 | 41 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 3,404,218 | 0 | T | G | 24.1% | 119.6 / 10.9 | 54 | G245G (GGT→GGG) | yhdH | acrylyl‑CoA reductase |
| * | NC_000913 | 3,404,215 | 0 | T | G | 22.2% | 121.1 / 13.7 | 54 | G244G (GGT→GGG) | yhdH | acrylyl‑CoA reductase |
| * | NC_000913 | 3,926,366 | 0 | A | C | 20.0% | 222.8 / 18.2 | 90 | G30G (GGT→GGG) | mioC | flavoprotein MioC |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 42 (0.660) | 6 (0.100) | 5/258 | 4.7 | 10.8% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 60 (1.020) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 3986559 | 84 (1.330) | 4 (0.060) | 4/272 | 5.3 | 4.6% | noncoding (128/172 nt) | glmZ | small regulatory RNA GlmZ |
| ? | NC_000913 | 3986563 = | 83 (1.330) | noncoding (132/172 nt) | glmZ | small regulatory RNA GlmZ | |||||