mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 363,940 | G→T | P789Q (CCG→CAG) | lacZ ← | beta‑galactosidase |
| RA | 553,507 | G→T | P145Q (CCG→CAG) | lpxH ← | UDP‑2,3‑diacylglucosamine diphosphatase |
| JC JC | 571,356 | IS2 (–) +5 bp | coding (464‑468/552 nt) | ybcL → | DLP12 prophage; periplasmic protein YbcL |
| RA | 644,345 | C→A | C220F (TGC→TTC) | rna ← | RNase I |
| RA | 728,468 | G→T | L89I (CTT→ATT) | kdpA ← | K(+) transporting P‑type ATPase subunit KdpA |
| RA | 744,292 | G→T | G17V (GGT→GTT) | pxpC → | 5‑oxoprolinase component C |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,360,746 | G→T | R55S (CGT→AGT) | puuA ← | glutamate‑putrescine ligase |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,893,777 | C→A | intergenic (+66/‑356) | yoaB → / → yoaC | RutC family protein YoaB/DUF1889 domain‑containing protein YoaC |
| RA | 1,948,841 | G→A | A561V (GCG→GTG) | aspS ← | aspartate‑‑tRNA ligase |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 3,080,385 | A→T | I417I (ATT→ATA) | tktA ← | transketolase 1 |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,925,213 | G→T | Q141K (CAA→AAA) | mnmG ← | 5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG |
| RA | 4,083,225 | G→T | N866K (AAC→AAA) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102938 | 3104083 | 1146 | 28 [27] | [27] 28 | mutY | mutY |
| * | * | ÷ | NC_000913 | 3423785–3424234 | 3424535–3424238 | 5–751 | 29 [20] | [26] 28 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 119 (1.120) | 27 (0.290) | 22/244 | 2.5 | 22.0% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 86 (0.920) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 103 (1.000) | 70/268 | 0.1 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 137 (1.300) | 169 (1.610) | 77/274 | 0.1 | 70.6% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 5 (0.050) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 125 (1.180) | 85/276 | 0.0 | 96.9% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 4 (0.040) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||