mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 173,109 | C→A | L550M (CTG→ATG) | fhuB → | iron(III) hydroxamate ABC transporter membrane subunit |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 302,016 | G→T | V186V (GTC→GTA) | paoA ← | aldehyde dehydrogenase, Fe‑S subunit |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| JC JC | 1,217,386 | IS1 (–) +8 bp | coding (59‑66/1524 nt) | pdeG → | putative c‑di‑GMP phosphodiesterase PdeG |
| RA | 1,230,822 | G→T | S19I (AGC→ATC) | umuD → | DNA polymerase V protein UmuD |
| RA | 1,658,572 | G→T | M168I (ATG→ATT) | ynfE → | putative selenate reductase YnfE |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| RA | 1,820,775 | G→T | A147E (GCG→GAG) | chbC ← | N,N'‑diacetylchitobiose‑specific PTS enzyme IIC component |
| RA | 1,839,491 | G→C | A9P (GCG→CCG) | ynjE → | molybdopterin synthase sulfurtransferase |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,967,672 | C→A | G277V (GGG→GTG) | cheB ← | protein‑glutamate methylesterase/protein glutamine deamidase |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,312,221 | G→T | P177T (CCA→ACA) | ompC ← | outer membrane porin C |
| RA | 2,363,183 | G→T | P151T (CCC→ACC) | yfaY ← | IPR008135 CinA family protein YfaY |
| RA | 2,616,809 | C→A | P239Q (CCG→CAG) | bepA → | beta‑barrel assembly‑enhancing protease |
| RA | 2,762,018 | C→A | R508L (CGT→CTT) | abpB ← | CP4‑57 prophage; putative helicase YfjK |
| RA | 2,898,944 | G→T | R159R (CGA→AGA) | ygcU ← | putative FAD‑containing dehydrogenase |
| RA | 3,135,446 | G→T | A309E (GCA→GAA) | pitB ← | metal phosphate:H(+) symporter PitB |
| RA | 3,204,883 | C→A | L64M (CTG→ATG) | plsY → | putative glycerol‑3‑phosphate acyltransferase |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 4,219,615 | C→T | D340D (GAC→GAT) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,244,141 | C→A | R312L (CGC→CTC) | malF ← | maltose ABC transporter membrane subunit MalF |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,382,280 | G→T | A13A (GCC→GCA) | frdA ← | fumarate reductase flavoprotein subunit |
| RA | 4,505,167 | C→A | G370G (GGC→GGA) | yjhB → | putative sialic acid transporter |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102950 | 3104063 | 1114 | 13 [12] | [12] 14 | [mutY] | [mutY] |
| * | * | ÷ | NC_000913 | 3423770–3424233 | 3424526–3424239 | 7–757 | 13 [11] | [11] 13 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 54 (1.090) | 34/268 | 0.4 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 100 (1.970) | 78 (1.550) | 48/274 | 0.1 | 60.9% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 1 (0.020) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 52 (1.020) | 38/276 | 0.3 | 98.1% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 1 (0.020) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||